Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g1048 ATGGCTTACCAAAATCACAACCACCACTTCTCTCAACAGCAACTAGCTTCAGCCCCAGACCTTAGCAACAAGCCTCACTCCGATCCTAACCACTCTCTCCAAACCGCGCCTAATTGGCTCAACAACGCTCTTCTACGTACCCAATACGATACTAATAACCATAGCGAAGTAATGAACGTTGTCACTGCCGGCGCCGGAGAATCCATCATCGCCGGCGTATCCCACGACTCCGACGAATTGAAGGCTGACACTGGAGCCGGCAGGGAGAAGAAGGAGGCAGCGGAGGACGGTGGCGGCGAGGATGGATTGGTGAAGTGGCAGAACGGAAGGTACAAGGCGGAGATAGTGGCGCATCCACTGTACGAAGAGCTTTTGTCGGCACACGTGTCGTGCTTACGGATCGCCACGCCGGTTGATCAGTTACCAAGAATCGACGACCAGCTTGCTCAGTCACAGAATGTTGTAGCTAAGTACTCCTCTTTCGGAAATATGATTGATGATGATAACAAGGAACTTGATCAGTTCTTGTCACACTATGTTCTATTGCTCTGTTCCTTCAAAGAACAACTTCAACAACATGTTCGGGTCCATGCAATGGAAGCAGTGATGGCTTGTTGGGAGATTGAGCAATCCTTACAAAGTTTAACAGGAGTTTCACCGGGAGAAGGTACAGGCGCAACAATGTCTGATGACGAAGATGACCAAGTAGATAGTGATATCAATCTACTTGATGGTGGTTTGGATGGTCATGATAGCATGGGATTTGGCCCTCTAATTCCAACAGAGAATGAGAGGTCCCTCATGGAACGTGTAAGGCATGAATTAAAGCATGAATTGAAACAGGGTTATAAGGAGAAAATTGTGGACATAAGAGAAGAAATTCTACGCAAGAGACGAGCCGGGAAATTACCTGGTGATACAACCTCTGTTCTTAAAGCCTGGTGGCAGTCACATTCTAAGTGGCCTTACCCTACAGAGGAAGATAAGGCAAGGTTGGTGCAGGAAACTGGTTTGCAACTAAAGCAGATTAATAACTGGTTTATAAATCAGAGAAAGAGGAACTGGCATAGCAATCCTTCTACTTCTACTGTCTTGAAGAACAAGCGCAAAAGAAGTAATGCAGGTCATAGTAGTGGTGATCGTTGCATGTAA 1152 0.4661 MAYQNHNHHFSQQQLASAPDLSNKPHSDPNHSLQTAPNWLNNALLRTQYDTNNHSEVMNVVTAGAGESIIAGVSHDSDELKADTGAGREKKEAAEDGGGEDGLVKWQNGRYKAEIVAHPLYEELLSAHVSCLRIATPVDQLPRIDDQLAQSQNVVAKYSSFGNMIDDDNKELDQFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDINLLDGGLDGHDSMGFGPLIPTENERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKNKRKRSNAGHSSGDRCM* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g1048 383 Gene3D - 295 356 - -
Lan15g1048 383 ProSiteProfiles 'Homeobox' domain profile. 294 357 IPR001356 GO:0003677
Lan15g1048 383 MobiDBLite consensus disorder prediction 354 368 - -
Lan15g1048 383 CDD homeodomain 297 358 IPR001356 GO:0003677
Lan15g1048 383 SMART HOX_1 296 361 IPR001356 GO:0003677
Lan15g1048 383 MobiDBLite consensus disorder prediction 354 383 - -
Lan15g1048 383 Pfam KNOX2 domain 168 216 IPR005541 GO:0003677|GO:0005634
Lan15g1048 383 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 52 373 - -
Lan15g1048 383 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 52 373 - -
Lan15g1048 383 SMART KNOX1_2 109 153 IPR005540 GO:0003677|GO:0005634
Lan15g1048 383 ProSiteProfiles ELK domain profile. 274 294 IPR005539 GO:0003677
Lan15g1048 383 Pfam Homeobox KN domain 314 353 IPR008422 GO:0003677|GO:0006355
Lan15g1048 383 SUPERFAMILY Homeodomain-like 296 360 IPR009057 -
Lan15g1048 383 SMART ELK_2 274 295 IPR005539 GO:0003677
Lan15g1048 383 MobiDBLite consensus disorder prediction 74 99 - -
Lan15g1048 383 SMART KNOX2_2 160 217 IPR005541 GO:0003677|GO:0005634
Lan15g1048 383 MobiDBLite consensus disorder prediction 74 102 - -
Lan15g1048 383 MobiDBLite consensus disorder prediction 1 36 - -
Lan15g1048 383 Pfam KNOX1 domain 111 152 IPR005540 GO:0003677|GO:0005634
Lan15g1048 383 Pfam ELK domain 274 295 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g1048 Lan-Chr15 19511679 19514780 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g1048 39 371 Homeobox Transcription Factor Family AT5G25220 75.291 1.96e-180 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lan15g1048 KNOX2 2.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g1048 - - lang:109328229 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g1048 15 19511679 19514780 Lan14g0820 14 15000889 15004719 LSH