Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g1045 ATGGGAAAACCTACAGGGAAGAAGAAAGATCCTCCAACCTCAAATTCAAAGGCAAAACGTGCATCGAAGGCTTTCGATGAAGACACCGCAGTGTTCATCAACATGTCACAAGAGCTCAAAGAAGAAGGTAACAAGTTATCTCAAAAGAAAGACCATGAAGGTGCTATGTTAAAGTACGAAAAAGCCCTCAGTCTTCTTCCGAAAAATCACATTGATGTTGCACACCTTCATACAAGTATGGCTACTTGTTATATGCAATTAGGTCTCGGTGAGTATCCTCGAGCCATTAATGAGTGTAATTTAGCATTACAAGTTTCACCTAGGTATAGCAAGGCCATGTTGAAAAGAGCTAAGTGTTATGAAGCGCTTAATCGATTGGATTTGGCGCTTCGGGATATTAATCTTGTTTTGACTGTGGAGCCTAATAATGTTTCCGCATTGGAGTTCCGTGAGAGTTTGAGAAAGACAATGGAGGAAAAAGGTATTAGAGCAGATGAAGAAAATGATATTGCTTTGTCTAGTACTGTACAATTACAACAGGCTCCTGCTCCTGTTGTGCAGAAAGTCGTAAAAGAGAAAGTAAAAAAAAAGAGAGGTAAGAAAAGTGAGGACAAGGTTGTTGGTGAGGAGGATTTGAATGCTCTTCAGGATAAAAAAGTGGTTGCAGATACAATTGAGGCCGAAAAATTGATGGTGGAAGCGGTTAAGGAAGAAAAGGTTGTCAGCAGGACTGTGAAATTGGTATTTGGAGAGGATATTAGGTGGGCGCAGTTGCCGGTGAATTGTAGTATGAAGTTGGTGAGGGATGTAGTTAGAGATCGGTTCCCGGGCTTCAAGGGTGTCCTTGTAAAGTATAGGGATGAAGAAGGTGATTTGGTTACAATCACTACTACTGATGAACTAAGGCTAGCTGAGTCTTCAGGTCATACAATGGGATCGGTTCGACTGTATATTACAGAAGCCAGTCCGGAGCAAGAACCTTCTTATGATAGAATAACCAAAGGGGTTGAGGTGCGAACTGATGGTAGAAAATCAAGTGACAGTATTGAGAATGGGGGTGTGGAAGAAGGTAAAGGTTTATCAAATAGGAAGACTACTGTGGAGGACTGGCTTATCCAGTTTGCGAGGCTATTCAAGAACCATGTTGGGTTTGATTCTGATTCTTATCTAGATATCCACGAGCTTGCAATGAAGCTGTATGCTGAAGCAATGGAGGATACAGTAACAAGTGACGATGCTCAAGAACTTTTTGAGATTGCTGCTGATAAATTTCAAGAGATGGCAGCTTTGGCATTATTTAACTGGGGGAGTGTTCACTTGTCCAGGGCAAGGAACCAGGCTTTCTTTTCAGATGTTGGGTCAAGAGAGTATTCTATTGATCATATTAATGCTGCGTATGAGTGGGCGCAAAAAGAGTACAAGAAAGCAGAATTGCGATATGAAGAAGCCTTGAAAATTAAACCAGACTTCTATGAAGGATATCTTGCTCTTGGGCATCAGCAGTTTGAGCAAGCAAGGCTCTGTTGGTGTTATGTGATGGCATTCAAGATGGATTTAGAAGGTGGCTCTGCCGATGAGGTTTTATTACTCTATAACAAGGCAGAGGACTGCATGGAGAAAGGCCTCTTGATGTGGGAGGAGATTGAAGAGCAGCGATTAAATGGACTATCCAAATCAGATAAATATAAAGCACTTTTAGAGAAAATGGGGTTGGATAATATTTTCAATGAAATTTCTTCTGATGATGTTTCAGAGGAGGCTGCGAAGATGAAATCACAGGTATATCTTTTATGGGGTACCTTATTGTATGAACGGTCTGTTGTGGAATATAAGCTAGGCCTGCCAACATGGGAGGAATGTTTAGAGGTAGCAGTTGAAAAGTTTGAACTAGCTGGAGCTTCTGCAACAGATATTGCTGTCATTATAAAGAATCATTGCTCTAATGAAACAGCTCTTGAAGGGTTCAAAATTGATGAGATAGTTCAGGCATGGAATGAGATGTATGATGCTCAGGGGTGGCAGTTTCGTGCTCCATCATTTAGGCTTGAACCATTGTTTCGTCGGCGTGTTCCTAAACTCCATGACATCTTGGAGCAATTTTAA 2103 0.4123 MGKPTGKKKDPPTSNSKAKRASKAFDEDTAVFINMSQELKEEGNKLSQKKDHEGAMLKYEKALSLLPKNHIDVAHLHTSMATCYMQLGLGEYPRAINECNLALQVSPRYSKAMLKRAKCYEALNRLDLALRDINLVLTVEPNNVSALEFRESLRKTMEEKGIRADEENDIALSSTVQLQQAPAPVVQKVVKEKVKKKRGKKSEDKVVGEEDLNALQDKKVVADTIEAEKLMVEAVKEEKVVSRTVKLVFGEDIRWAQLPVNCSMKLVRDVVRDRFPGFKGVLVKYRDEEGDLVTITTTDELRLAESSGHTMGSVRLYITEASPEQEPSYDRITKGVEVRTDGRKSSDSIENGGVEEGKGLSNRKTTVEDWLIQFARLFKNHVGFDSDSYLDIHELAMKLYAEAMEDTVTSDDAQELFEIAADKFQEMAALALFNWGSVHLSRARNQAFFSDVGSREYSIDHINAAYEWAQKEYKKAELRYEEALKIKPDFYEGYLALGHQQFEQARLCWCYVMAFKMDLEGGSADEVLLLYNKAEDCMEKGLLMWEEIEEQRLNGLSKSDKYKALLEKMGLDNIFNEISSDDVSEEAAKMKSQVYLLWGTLLYERSVVEYKLGLPTWEECLEVAVEKFELAGASATDIAVIIKNHCSNETALEGFKIDEIVQAWNEMYDAQGWQFRAPSFRLEPLFRRRVPKLHDILEQF* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g1045 700 SMART PB1_new 242 321 IPR000270 GO:0005515
Lan15g1045 700 SMART tpr_5 110 143 IPR019734 GO:0005515
Lan15g1045 700 SMART tpr_5 458 490 IPR019734 GO:0005515
Lan15g1045 700 SMART tpr_5 36 69 IPR019734 GO:0005515
Lan15g1045 700 SMART tpr_5 74 109 IPR019734 GO:0005515
Lan15g1045 700 Gene3D Tetratricopeptide repeat domain 29 183 IPR011990 GO:0005515
Lan15g1045 700 ProSiteProfiles TPR repeat profile. 110 143 IPR019734 GO:0005515
Lan15g1045 700 MobiDBLite consensus disorder prediction 1 23 - -
Lan15g1045 700 SUPERFAMILY CAD & PB1 domains 240 331 - -
Lan15g1045 700 MobiDBLite consensus disorder prediction 336 351 - -
Lan15g1045 700 Pfam PB1 domain 243 319 IPR000270 GO:0005515
Lan15g1045 700 CDD PB1 244 318 - -
Lan15g1045 700 Gene3D - 229 321 - -
Lan15g1045 700 MobiDBLite consensus disorder prediction 336 360 - -
Lan15g1045 700 Gene3D Tetratricopeptide repeat domain 372 633 IPR011990 GO:0005515
Lan15g1045 700 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Lan15g1045 700 ProSiteProfiles PB1 domain profile. 242 321 IPR000270 GO:0005515
Lan15g1045 700 SUPERFAMILY TPR-like 36 505 IPR011990 GO:0005515
Lan15g1045 700 Coils Coil 459 486 - -
Lan15g1045 700 PANTHER PROTEIN PHOX4 1 699 - -
Lan15g1045 700 PANTHER PROTEIN CLMP1 1 699 IPR044517 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g1045 Lan-Chr15 19485161 19490410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g1045 24 159 Calmodulin-binding Proteins AT3G25230 26.207 2.03e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g1045 - - lang:109326417 1101.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g1045 15 19485161 19490410 Lan14g0817 14 14982595 14986546 LSH
Lan6g1781 6 29114035 29116812 Lan15g1045 15 19485161 19490410 PCT
Lan15g1045 15 19485161 19490410 Lan6g1781 6 29114035 29116812 PCT