Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g1013 ATGTCTCAAACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCATGATTACCTAGTAAAGAGAGATTTGAAGGCTTCTGCTCAAGCTTTTCAAGCTGAAGGAAAAGTCTCCTCGGACCCTGTTGCTATTGATGCCCCGGGAGGTTTTTTGTTCGAGTGGTGGTCGGTTTTCTGGGACATATTTATTGCCAGGACCAATGAGAAGCACTCAGAGGTTGCTGCATCGTATATTGAGAAACAACTAATTAAGGCAAGAGAGCAACAGCAGCAGCCACAATCCCAGCAGTCACAGCATCAACAGCAGCAGCAACACATGCAGATGCAACAACTCTTGATGCAGAGGCACGCACAGCAGCAGCAGCAACAACAGCAGCAGCAACAACAACAACAACAACAACATCAACAGCAGCAGCAGCAACAACAGCAGCAGCATCAGCCACCCCAACAACAGCAAAGCACAGATAGAGCTCACCTCTTAAATGGCAGTACAAATGGGTTAGTTGGAAACTCCGGAACTGCAAATGCACTAGCAACAAAGATGTATGAGGAAAGGTTAAAATTGCCCCTTCAGAGAGATTCTTTGGATGATGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGTCAACTGTTGGACCCAAATCATCCATCATTATTAAAGTCACCTGCAGCTTCTGGCCAGCCGTCAGGGCAAGTTTTGCATGGTGCTGGTGGTGGGATGTCTCCACAATTCCAAGCTCGTAGTCAGCAATTGCCAGGGTCTACTCCTGATATAAAGAGTGAGATTAATCCTGTTTTAAATCCCAGAGCTGCGGGTTCCGAAGGATCATTGCTAGCAATTCCAGGATCAAATCAAGGTAGCAACAATTTGACTCTGAAAGGGTGGCCGCTCACAGGTTTGGAACAACTACGCTCTGGTCTACTCCAACAACAAAAACCATTCATTCAAGCTCCTCAGCCTATTCATCAACTTCAAATGTTGACACCACAGCAACAGCTTATGTTTGCCCAACAAAATTTAGCATCACCATCTGCCAGTGATGAAAGTAGAAGACTCAGAATGCTCTTGAATAATAGGAGTATGAGCCTAAATAAGGATGGTTTTTCAAATTCTGTTGGTGATGTAGTATCAAACATTGGATCACCTCTTCAAGGTGGTGCCCCCTCGTTTGGGCGTGGAGATACAGATATGCTAATGAAGTTGAAACTGGCTCAGTTACAGCATCAGCAACAGCTAAACACCAATTCGCAGCAGCAGCAACTTCAACAACCTGCTCTTTCGAATCAGCAATCTCAGCCTTCCAATCATAACATCCATCAGCAAGATAAAGCGGGGGGAGGTGGTGGCAGTGGCATCGTGGATGGTAGCATGTCAAACTCCTTTAGAGGAAATGATCAGGTTTCAAAAAACCAGATGGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCAGGTCCCGCCAATAGCACAGGAACAGCAAATACAACTGGCCCATCACCAAGTTCTGCACCCTCTACTCCCTCTACTCATACGCCTGGAGATGTGATATCAATGCCTGCCTTGCCTCATAGTGGTAGTTCTTCAAAGCCGTTAATGATGTTCAGCACTGATGGCACTGGAACTCTTACATCACCTTCAAACCAGCTGGCTGATGTGGATCGGTTTGTGGACGATGGATCGCTTGATGAAAATGTCGAGTCTTTTTTATCCCATGATGATACAGACCCTAGAGATACAGTTGGTCGCTGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAATTAAATTCTGTACGTGCAAGCACAAGCAAAGTTGTCTGTTGCCACTTTTCATCCGATGGGAAATTGCTTGCAAGCGGTGGCCATGACAAAAAGGCTGTTTTGTGGCACACAGATTCTCTAAAGCAAAAAGCTACTCTTGAAGAGCATTCATCTTTGATTACTGATGTCCGTTTCAGTCCAAGCTTGCCTCGGCTGGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGGTATTCGCTTCGGACCTTTACAGGACATTCGGCAGCTGTTATGTCACTAGATTTTCACCCCAATAAAGATGACCTTATCTGCTCTTGTGACGGTGATGGTGAAATACGATATTGGAGTATAAACCATGGCAGTTGTACTAGAGTCTCCAAGGGTGGCACTATCCAGGTGAGATTCCAACCTCGTCTAGGAAGGTACCTTGCTGCAGCTGCAGAGAATGTTGTGTCTATACTTGATGTTGAGACACAAGCATGCCGATATTCATTAAAGGGACACACGAAGCCGATACACTCTGTATGTTGGGACCCTTCTGGCGAGTTGCTGGCATCCGTGAGTGAAGACTCTGTCAGGGTTTGGACTCTTGGAACAGGGAGTGAAGGGGAATGTGTACATGAGCTCAGCTGCAATGGCAGTAAATTTCACTCATGTGTTTTCCACCCAACATACCCTTCATTGCTGGTCATCGGTTGCTACCAGTCATTGGAGCTATGGAATATGAGTGAGAACAAGACAATGACACTTTCTGCTCATGAAGGTCTTATCGCTGCCTTGTCGGTTTCAACTGTAAATGGTCTGGTTGCTTCTGCCAGCCATGACAAGTTTATCAAGCTCTGGAAGTGA 2652 0.4548 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIEKQLIKAREQQQQPQSQQSQHQQQQQHMQMQQLLMQRHAQQQQQQQQQQQQQQQQHQQQQQQQQQQHQPPQQQQSTDRAHLLNGSTNGLVGNSGTANALATKMYEERLKLPLQRDSLDDAAMKQRFGENMGQLLDPNHPSLLKSPAASGQPSGQVLHGAGGGMSPQFQARSQQLPGSTPDIKSEINPVLNPRAAGSEGSLLAIPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFIQAPQPIHQLQMLTPQQQLMFAQQNLASPSASDESRRLRMLLNNRSMSLNKDGFSNSVGDVVSNIGSPLQGGAPSFGRGDTDMLMKLKLAQLQHQQQLNTNSQQQQLQQPALSNQQSQPSNHNIHQQDKAGGGGGSGIVDGSMSNSFRGNDQVSKNQMGRKRKQPVSSSGPANSTGTANTTGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLADVDRFVDDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSELNSVRASTSKVVCCHFSSDGKLLASGGHDKKAVLWHTDSLKQKATLEEHSSLITDVRFSPSLPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSAAVMSLDFHPNKDDLICSCDGDGEIRYWSINHGSCTRVSKGGTIQVRFQPRLGRYLAAAAENVVSILDVETQACRYSLKGHTKPIHSVCWDPSGELLASVSEDSVRVWTLGTGSEGECVHELSCNGSKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLSAHEGLIAALSVSTVNGLVASASHDKFIKLWK* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g1013 883 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 851 883 - -
Lan15g1013 883 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 883 - -
Lan15g1013 883 Gene3D - 733 883 IPR015943 GO:0005515
Lan15g1013 883 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 883 IPR044716 GO:0003714
Lan15g1013 883 SUPERFAMILY WD40 repeat-like 594 883 IPR036322 GO:0005515
Lan15g1013 883 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 641 676 - -
Lan15g1013 883 MobiDBLite consensus disorder prediction 89 116 - -
Lan15g1013 883 MobiDBLite consensus disorder prediction 411 443 - -
Lan15g1013 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 641 676 IPR001680 GO:0005515
Lan15g1013 883 MobiDBLite consensus disorder prediction 455 514 - -
Lan15g1013 883 Pfam LisH 10 36 IPR006594 GO:0005515
Lan15g1013 883 MobiDBLite consensus disorder prediction 209 256 - -
Lan15g1013 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 766 806 IPR001680 GO:0005515
Lan15g1013 883 CDD WD40 599 883 - -
Lan15g1013 883 MobiDBLite consensus disorder prediction 411 533 - -
Lan15g1013 883 Gene3D - 575 732 IPR015943 GO:0005515
Lan15g1013 883 MobiDBLite consensus disorder prediction 137 156 - -
Lan15g1013 883 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 684 719 - -
Lan15g1013 883 SMART Lish 8 40 IPR006594 GO:0005515
Lan15g1013 883 ProSitePatterns Trp-Asp (WD) repeats signature. 660 674 IPR019775 -
Lan15g1013 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 599 640 IPR001680 GO:0005515
Lan15g1013 883 Coils Coil 109 145 - -
Lan15g1013 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 851 883 IPR001680 GO:0005515
Lan15g1013 883 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Lan15g1013 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 684 726 IPR001680 GO:0005515
Lan15g1013 883 Pfam WD domain, G-beta repeat 638 673 IPR001680 GO:0005515
Lan15g1013 883 Pfam WD domain, G-beta repeat 846 883 IPR001680 GO:0005515
Lan15g1013 883 Pfam WD domain, G-beta repeat 762 796 IPR001680 GO:0005515
Lan15g1013 883 Pfam WD domain, G-beta repeat 680 717 IPR001680 GO:0005515
Lan15g1013 883 Pfam WD domain, G-beta repeat 598 630 IPR001680 GO:0005515
Lan15g1013 883 SMART WD40_4 634 673 IPR001680 GO:0005515
Lan15g1013 883 SMART WD40_4 759 797 IPR001680 GO:0005515
Lan15g1013 883 SMART WD40_4 677 717 IPR001680 GO:0005515
Lan15g1013 883 SMART WD40_4 592 631 IPR001680 GO:0005515
Lan15g1013 883 SMART WD40_4 844 883 IPR001680 GO:0005515
Lan15g1013 883 SMART WD40_4 803 842 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g1013 Lan-Chr15 19284316 19294085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g1013 678 882 Miscellaneous Gene Families AT5G08390 25.714 4.71e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lan15g1013 WD40 0.11 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g1013 - - gmx:100816263 1213.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g1013 15 19284316 19294085 Lan14g0795 14 14822237 14831153 LSH
Lan15g1013 15 19284316 19294085 Lan3g1050 3 22811692 22821101 LSH
Lan10g0974 10 14761911 14772712 Lan15g1013 15 19284316 19294085 PCT
Lan3g1050 3 22811692 22821101 Lan15g1013 15 19284316 19294085 PCT
Lan15g1013 15 19284316 19294085 Lan10g0974 10 14761911 14772712 PCT
Lan15g1013 15 19284316 19294085 Lan3g1050 3 22811692 22821101 PCT