Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g1010 ATGTCTGAGCAGCATAATGAAGAACAACAACAACACATAGTTCTACATGACTTTCTGGGCATGAAGAACTTTCCTGATTCTACTCAAAACCCTCATCTAAGGCTCTCTCAACCTTCACCCTCTTCAACATCACGTGGACCCTTCTCTTCCTCTACCTCTGACATCGCTTCTGAAAAACATGTTGGAAATCACCTTGAGGGAGTTCCATTCTATGGCACTGAGATTAGTAACATACTAGTGGGAAACAAGAGAAGTAATTCTGATTCTACCTTTATTGGTTCCTCTAGAGATGCCTTCCAAATGGTCCCTGATTCCTTTCATAACTCACATTTAATGAAGATGCTCCGGAATGCAGGTGGAGGAGGAGAGCGAGTTAGAAGGCCCAATGATGATGAAGTGTTACTTGGTATGCAGTCGATGAAGCCGACTTCAGCTTCTCAGAAATGGGAGCGATCTATTCTCATACAGCATCCACAGCATGGAGGGCAAATCACACCTTTTGTCCACCAAAAAACTTCAAACAAGCTTAGGGATGCCAGTGCTGGTCCTTCATTTATTTCTCAGCCAGCTGCCGATGAAGGATCTAGAACTGGAATCAAGGCGCCGGGAATCTTAAATTCTATGAACACAACCACTACTGCCCTTGAGAAAATGTCACCTGTGGTGCTGCTTGGTGGAAGCAGGCCAAAGCATGTAACTAATGTAATGGATCCAGAATCTTCAACACCTCAGAGTCAACAGGGGCTAACATCTGGCAGCCGCCAAATGACTATTTTTTATGGAGGTCAAGCTCACGTTTTTGATTATGTCCACCCTCATAAGGCCAATGTTATAATGTCTTTAGCCGGGTCAAATGGTGGATCTTGGTCCACAGCATTCTCACCAAAATCTGCTGGAAAGCTGGTTAGTGATAGCAACTTGCACAGTGGAGAAAATGAAACAGGTACAATGAGTAATGTGCCATTACCACAGGAGCTTCATGGGAGATTGTCTATTACTGGAAGTTCTAGCCATGCCGTTGGGCCCAGTGATCGAGTATCCACTCCTGCAGGGGCACACCAAGGAAGCATTGTAGCTAAAGATACAAGAAAGCAAGTTCAAGCAGCAGATCCAAGTTCAGAAGCCTGA 1128 0.4477 MSEQHNEEQQQHIVLHDFLGMKNFPDSTQNPHLRLSQPSPSSTSRGPFSSSTSDIASEKHVGNHLEGVPFYGTEISNILVGNKRSNSDSTFIGSSRDAFQMVPDSFHNSHLMKMLRNAGGGGERVRRPNDDEVLLGMQSMKPTSASQKWERSILIQHPQHGGQITPFVHQKTSNKLRDASAGPSFISQPAADEGSRTGIKAPGILNSMNTTTTALEKMSPVVLLGGSRPKHVTNVMDPESSTPQSQQGLTSGSRQMTIFYGGQAHVFDYVHPHKANVIMSLAGSNGGSWSTAFSPKSAGKLVSDSNLHSGENETGTMSNVPLPQELHGRLSITGSSSHAVGPSDRVSTPAGAHQGSIVAKDTRKQVQAADPSSEA* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g1010 375 MobiDBLite consensus disorder prediction 234 252 - -
Lan15g1010 375 MobiDBLite consensus disorder prediction 25 55 - -
Lan15g1010 375 ProSiteProfiles Tify domain profile. 249 284 IPR010399 -
Lan15g1010 375 Pfam tify domain 251 283 IPR010399 -
Lan15g1010 375 MobiDBLite consensus disorder prediction 298 320 - -
Lan15g1010 375 PANTHER PROTEIN TIFY 8 46 374 - -
Lan15g1010 375 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 46 374 IPR040390 -
Lan15g1010 375 MobiDBLite consensus disorder prediction 332 375 - -
Lan15g1010 375 SMART tify_2 249 284 IPR010399 -
Lan15g1010 375 MobiDBLite consensus disorder prediction 185 204 - -
Lan15g1010 375 MobiDBLite consensus disorder prediction 233 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g1010 Lan-Chr15 19268408 19271594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g1010 7 282 Tify Gene Family AT4G32570 35.333 1.00e-38 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lan15g1010 tify 6.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g1010 - - lang:109327803 742.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g1010 15 19268408 19271594 Lan3g1049 3 22807419 22811029 LSH
Lan3g1049 3 22807419 22811029 Lan15g1010 15 19268408 19271594 PCT
Lan15g1010 15 19268408 19271594 Lan3g1049 3 22807419 22811029 PCT