Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g1009 ATGCAAATGAACAAAGAAAACAAAGTTAGTGCCAAAGATGAAGAGCGTCCACTCAGAATCACTAGATCAAGGACTAAGGCCTTGGGATCAGTGGGAGGAGGGATACCTCCCTATCCAAAACCATCCTTTAAGAATGAGCCGAAAAACAAGGTTCGAGCAAATTCGAAAAGAGCAGCTTCTGATGGCAACAAAACTAGTGCAATTGCTCCTGCTGGTCTTCAGCACAAGAGGAGGGCAGTTCTCACAGATGTAACTAACATCTGCGGAAAATCGTATGATAACACATCAAAGTTTCAAGCAAGAGGAGTTTATAAGAAGAACACAAAGCTAGCTTCAGGTATCTCCACCGGAAATTCGTCATCACAAGATGATGTTAAAGCAAAGTTAACTGAAGAATTATCATCAAAAGGGGTGGTTGAATCACATGAAAACATAGCTGAAGTAACTTTTGATGATAAAGAGCCAGCAGAATGTTGTATGTCCAATAGCATAAGAGAAGGTGCCATTGGAGACAACACGCTCTCAATGCAAGGCTCTGTGAAATCTGATGAACTTATGAGCTCTCCAAATAAAGAGATAGATATGATTTGTGAGAAAATAGCAGCCTCAGATTGCCTGGCCATTGTGGACATTGATTCAGAGTTGAAGTTAAAGGATCCTCTAGTTTGGAGTTCTTATGCCCCTGATATATACAACAAAACTCGTGTAGCAGAGGTTGAAAGGAAGCCGTTATCCGATTACATGGAGAAGTTGCAGAAAGACATTAGTCCAAGCATGCGGGCAATTCTGATTGACTGGCTTGTGGAGGTTACTGAGGAATACAAGTTGGTTCCAGACACTCTTTACCTGACTGTGAACCTCATTGATCGCTATCTCTCCACAAGTTTGATTCAGAAACAAAGACTCCAGTTGCTTGGTGTTACTTGTATGCTGATTGCATCAAAATATGAAGAGATTTGTGCTCCTCGAGTCGAAGAATTTTGCTTCATCACGGACAATACATACACGAGAGAAGAGGTATTGAAAATGGAGATTGAGGTTCTAAACCTTTTGAACTTCAAATTATCCGTTCCTACAACTAAAACATTTCTCAGGAGATTCATCCAAGCAGCCCAATCTTCTTACCAGGTTCCTCGCGTCGAACTGGAATTCCTAGCAAATTATTTGGCAGAGCTTACTCTTGTTGAATACAGATTCTTGAAGTTTCTACCTTCCCTTGTAGCTGCATCTGCTGTATTCCTAGCCAAATGGACTCTCAACCATTCGGAAAATCCATGGAATCCAACTCTGGAGCACTATACAAACTACAAAGTTTCAGAGCTTAAACCTGTTGTTCTTTCTCTGGAAAGTTTGCAACTTAATACCAAAGACTGTCCCCTGAATTCTATACGAGAGAAATACAAACAGCAGAAGTTCAATTGTGTGGCAAATTTGACTCCAAAACCGTTGCAGTCACTCTTCGAGGTTCAAGCGTAA 1476 0.4099 MQMNKENKVSAKDEERPLRITRSRTKALGSVGGGIPPYPKPSFKNEPKNKVRANSKRAASDGNKTSAIAPAGLQHKRRAVLTDVTNICGKSYDNTSKFQARGVYKKNTKLASGISTGNSSSQDDVKAKLTEELSSKGVVESHENIAEVTFDDKEPAECCMSNSIREGAIGDNTLSMQGSVKSDELMSSPNKEIDMICEKIAASDCLAIVDIDSELKLKDPLVWSSYAPDIYNKTRVAEVERKPLSDYMEKLQKDISPSMRAILIDWLVEVTEEYKLVPDTLYLTVNLIDRYLSTSLIQKQRLQLLGVTCMLIASKYEEICAPRVEEFCFITDNTYTREEVLKMEIEVLNLLNFKLSVPTTKTFLRRFIQAAQSSYQVPRVELEFLANYLAELTLVEYRFLKFLPSLVAASAVFLAKWTLNHSENPWNPTLEHYTNYKVSELKPVVLSLESLQLNTKDCPLNSIREKYKQQKFNCVANLTPKPLQSLFEVQA* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g1009 491 Pfam Cyclin, N-terminal domain 229 356 IPR006671 -
Lan15g1009 491 PANTHER CYCLIN-A2-4 55 487 - -
Lan15g1009 491 PIRSF Cyclin_A_B_D_E 41 490 IPR039361 -
Lan15g1009 491 ProSitePatterns Cyclins signature. 260 291 IPR006671 -
Lan15g1009 491 CDD CYCLIN 259 348 IPR013763 -
Lan15g1009 491 Pfam Cyclin, C-terminal domain 358 480 IPR004367 -
Lan15g1009 491 PANTHER CYCLINS 55 487 IPR039361 -
Lan15g1009 491 SUPERFAMILY Cyclin-like 218 355 IPR036915 -
Lan15g1009 491 CDD CYCLIN 356 448 IPR013763 -
Lan15g1009 491 SUPERFAMILY Cyclin-like 357 480 IPR036915 -
Lan15g1009 491 MobiDBLite consensus disorder prediction 1 64 - -
Lan15g1009 491 SMART Cyclin_C_2 358 481 IPR004367 -
Lan15g1009 491 Gene3D - 243 356 - -
Lan15g1009 491 SMART cyclin_7 362 450 IPR013763 -
Lan15g1009 491 SMART cyclin_7 265 349 IPR013763 -
Lan15g1009 491 MobiDBLite consensus disorder prediction 1 22 - -
Lan15g1009 491 Gene3D - 229 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g1009 Lan-Chr15 19256537 19262009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g1009 5 487 Core Cell Cycle Gene Families AT5G25380 50.308 8.05e-147 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g1009 K06627 - gmx:547780 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g1009 15 19256537 19262009 Lan14g0793 14 14804132 14809649 LSH
Lan3g1704 3 29576253 29584225 Lan15g1009 15 19256537 19262009 PCT
Lan15g1009 15 19256537 19262009 Lan3g1704 3 29576253 29584225 PCT