LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan15g1003	ATGAACGTTAAATCGGCGCATTCGTCGTATCGTGATCGGACATATGAATTCGAAAGCATTGCGGAGAGGTTGAACAAATCACGATCACCTCCAATCACTAGTAATACAACCACCTCCGATGAACAGAGATCCGCCATTGCGTTTCAATCAGAATTCAATAGGAGAGCTTCTAAGATTGGCTATGCCATTCACCAAACCTCTCAGAAACTCGCTAACCTCGCTAAGCTGGCGAAGAGGAGTTCGGTGTTTGATGATCCGAGTATGGAAATACAAGAGCTTACGAGTGTTATAAAGCAAGATATCAATGCTCTCAATTCTGCTGTTGTTGATCTTCAATCACTCTCCGTTTCGCGAAATCAGAGTGGTGATGACACTACTAATCATTCAACTACTGTTGTTGATGACCTTAAGACACGTTTGATGACAACCACGAAGGACTTCAAAGATGTTCTCACCATGCGAACTCAGAACTTGAAAGTGCATGAGAATAGGAGGCAATTGTTCTCATCCTCTGCGTCTAAGGAAACTGCGAATCCTTTTGTTCGACAACGTCCATTGGCGACAAGATCAGCAGCTAGTTCTTCTAATGCTGCTGCTGCTGCACCCCCATGGGCTAGTAGTTCGGGCTCACCGTCTTCATCTCAGCTATTCCCTAAGAAACCGGTGGATGGGGAGAGTCAACCATTGCTGCAGCAACAGCAGCAACAGCAGGAGATGGTTCCATTGCAAGACAGTTACATGCAAAGCCGAGCTGAAGCTCTTCATAATGTTGAGTCCACTATTCATGAGCTAAGCAACATTTTTAATCAACTTGCAACTCTTGTTTCTCAACAAGGAGAGGTTGCCATCAGGATTGATGAGAACATGGATGATACATTGGCAAACGTAGAGGGGGCACAAGGGGCTTTGCTGAAATACCTGAGCAGCATATCTTCTAATAGGTGGCTGATGATCAAGATTTTCTTTGTATTAATATTTTTCCTTATGGTTTTCTTATTTTTTGTGGCATAG	1011	0.4372	MNVKSAHSSYRDRTYEFESIAERLNKSRSPPITSNTTTSDEQRSAIAFQSEFNRRASKIGYAIHQTSQKLANLAKLAKRSSVFDDPSMEIQELTSVIKQDINALNSAVVDLQSLSVSRNQSGDDTTNHSTTVVDDLKTRLMTTTKDFKDVLTMRTQNLKVHENRRQLFSSSASKETANPFVRQRPLATRSAASSSNAAAAAPPWASSSGSPSSSQLFPKKPVDGESQPLLQQQQQQQEMVPLQDSYMQSRAEALHNVESTIHELSNIFNQLATLVSQQGEVAIRIDENMDDTLANVEGAQGALLKYLSSISSNRWLMIKIFFVLIFFLMVFLFFVA*	337

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan15g1003	336	SUPERFAMILY	t-snare proteins	49	299	IPR010989	GO:0016020\|GO:0016192
	Lan15g1003	336	MobiDBLite	consensus disorder prediction	186	237	-	-
	Lan15g1003	336	ProSiteProfiles	t-SNARE coiled-coil homology domain profile.	244	306	IPR000727	-
	Lan15g1003	336	MobiDBLite	consensus disorder prediction	26	44	-	-
	Lan15g1003	336	Gene3D	-	45	299	-	-
	Lan15g1003	336	PANTHER	SYNTAXIN-32-LIKE	2	335	-	-
	Lan15g1003	336	Pfam	Syntaxin-5 N-terminal, Sly1p-binding domain	6	26	IPR021538	-
	Lan15g1003	336	Pfam	SNARE domain	281	332	IPR000727	-
	Lan15g1003	336	MobiDBLite	consensus disorder prediction	21	44	-	-
	Lan15g1003	336	MobiDBLite	consensus disorder prediction	162	178	-	-
	Lan15g1003	336	PANTHER	SYNTAXIN	2	335	IPR045242	-
	Lan15g1003	336	CDD	SNARE_syntaxin5	247	325	-	-
	Lan15g1003	336	SMART	tSNARE_6	239	306	IPR000727	-
	Lan15g1003	336	MobiDBLite	consensus disorder prediction	187	237	-	-
	Lan15g1003	336	MobiDBLite	consensus disorder prediction	162	181	-	-
	Lan15g1003	336	ProSitePatterns	Syntaxin / epimorphin family signature.	250	289	IPR006012	GO:0005484\|GO:0006886\|GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan15g1003	Lan-Chr15	19217337	19220753	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan15g1003	1	336	SNARE and Associated Proteins	AT3G24350	62.842	3.78e-142	404

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan15g1003	K08490		-	gmx:100811494	449.899