Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0983 ATGATGGATGAATATTCTGGTAAAAGATCTACTGGTGGGGTGGTAGTCCCTAGAAAGGGGATGGGACATGCCTTCAAAGATACTGCTAATACTAAAGATCGTAATAGTCAAGCTTGCAGCCGCCTTGGTTGTAGTAGAAGAGTCAACTCTCCTAAAGGTGCTCAAGTCGGTTCTTCTGAGAAAGGTAAATCTTTGAAGCCTTCAACCCGATCCTCTGCCAGTGGCAAGGAAGCAATTGGAAGTTCGTCTAGAACTTTCACAGGGACTAGTAGCCCAGGGAAACCCCTTCTAAGGCCTCGGAAAACATTGTCCTCTCAGTTAGAGGCAGATTCATCTGAAACAAGTAGCATACAGGACGAACCAGAAGCTTCAAATCTCATCCCTCCACCTGAAAAGATTCGGAGAGGGCTTCAAGCAGAAGTTCAAAATGTGGACTCGGGTGATGCCATGCCGATGGAAGTAGGGAGCTCTAGTGTAGCATCTAATACAAAATCTAGGAGGAGTTTTCATCCTAAACCTGGATTGCGTGGTCAAGAAGTTAAAAGCAATGGTCCAGTTACACGTGCTGTTCCCAATAGCTATGGGTTGAGGAACCTCAGATGCAACTCTATATCTGATGTCATCCCAGCTGGTGGCTGTTCATCATCTGATTCAACCCTGAACAGAAGGAAGAATATGATAAAAAAGAGAAACTGTGAAGGGGAAAGCAGTTCCAGTGCTAGAGGGAAGAACATGAGTGGGCCTTCATTTGAAGGACGGAATTCTGGTTCCAGAAATGGTATATCTATCTCTGATTCAAGAAGATCGAGAAATACTCCTCCTCACATAGACAGGCCGGACAGCAATGTAGGTTCAGTTAGAACACGAAGAACAGTGAGCGGTCAAGCCAGAGGAAGGTTTTCCAGCCAAGGAAATGTTAATCCCGTGGCAACCAGTGAGTCTCTTTCAGTTGTTCCTCCTTTGCCACGTTCTGGGGATCTTAATGCTCCTGGTGTATCATATCGTTCTTCTGTGGAGGCTGCCTTAAATCGACCAAGCTCTTATATTATGCCAGGTACTAGCAATGAGGAGTTATATGGTGTTATGCCTGTGCCTTCTTCAGAATATGGCATAACTCGTTCTCTAATCAATCGGGAGGGATTTCGACGACGCTACAATATGGATGGTATTGCAGAGGTGTTGTTGGCACTTGAGAGGATTGAGCAAGATGTTGAGCTAACACATGAGCAAATTCTTATGCTGGAGTCCAACTTGTTCCTCAATGGACTGAACTTCTATGATCAGCATCGAGACATGCGGCTGGACATTGATAACATGTCATATGAGGAACTGTTAGCTCTGGAAGAGAGGATGGGTACTGTGAGCACTGCTCTAACCGAGGAAGCATTATCGGAATCTCTAAAGAGAAGTTTCTATCAGCCCTTGCCCAGAGATGATGAAGCTGAGAGTTCTAATGAGCACAAAGATGATACCAAATGCAGCATCTGTCAGGAGGATTATTTGGTTGCAGATGAAGTGGGGAGTCTGAAATGTGAGCATAAATATCATGTGGTTTGTATACAGCAGTGGCTGAGGCTGAAAAACTGGTGCCCTATTTGCAAAGCACCAATAGGGCCTTCAAATTCATCATCTCCATCTCATTAG 1644 0.4489 MMDEYSGKRSTGGVVVPRKGMGHAFKDTANTKDRNSQACSRLGCSRRVNSPKGAQVGSSEKGKSLKPSTRSSASGKEAIGSSSRTFTGTSSPGKPLLRPRKTLSSQLEADSSETSSIQDEPEASNLIPPPEKIRRGLQAEVQNVDSGDAMPMEVGSSSVASNTKSRRSFHPKPGLRGQEVKSNGPVTRAVPNSYGLRNLRCNSISDVIPAGGCSSSDSTLNRRKNMIKKRNCEGESSSSARGKNMSGPSFEGRNSGSRNGISISDSRRSRNTPPHIDRPDSNVGSVRTRRTVSGQARGRFSSQGNVNPVATSESLSVVPPLPRSGDLNAPGVSYRSSVEAALNRPSSYIMPGTSNEELYGVMPVPSSEYGITRSLINREGFRRRYNMDGIAEVLLALERIEQDVELTHEQILMLESNLFLNGLNFYDQHRDMRLDIDNMSYEELLALEERMGTVSTALTEEALSESLKRSFYQPLPRDDEAESSNEHKDDTKCSICQEDYLVADEVGSLKCEHKYHVVCIQQWLRLKNWCPICKAPIGPSNSSSPSH* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0983 547 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 2 537 - -
Lan15g0983 547 MobiDBLite consensus disorder prediction 1 131 - -
Lan15g0983 547 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 2 537 IPR045191 GO:0061630
Lan15g0983 547 SMART ring_2 493 533 IPR001841 -
Lan15g0983 547 Pfam Ring finger domain 492 534 IPR001841 -
Lan15g0983 547 MobiDBLite consensus disorder prediction 237 269 - -
Lan15g0983 547 SUPERFAMILY RING/U-box 486 540 - -
Lan15g0983 547 Coils Coil 397 417 - -
Lan15g0983 547 MobiDBLite consensus disorder prediction 227 317 - -
Lan15g0983 547 MobiDBLite consensus disorder prediction 51 92 - -
Lan15g0983 547 MobiDBLite consensus disorder prediction 285 317 - -
Lan15g0983 547 ProSiteProfiles Zinc finger RING-type profile. 493 534 IPR001841 -
Lan15g0983 547 MobiDBLite consensus disorder prediction 144 189 - -
Lan15g0983 547 MobiDBLite consensus disorder prediction 104 122 - -
Lan15g0983 547 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 454 539 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0983 Lan-Chr15 19068522 19073529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0983 371 534 C3H Transcription Factor Family AT2G15530 41.463 4.19e-34 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0983 - - gmx:100787213 795.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0983 15 19068522 19073529 Lan14g0772 14 14621010 14625564 LSH
Lan15g0983 15 19068522 19073529 Lan3g1468 3 26248685 26252064 LSH