Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0980 ATGTCTCGCGTTTATGTTGGTAACCTTGATTCCCGTGTTACTGAGAGAGAACTTGAAGATGAATTCCATGTTTTTGGAGTTATACGAAGTGTGTGGGTTGCACGGAGGCCACCTGGTTATGCTTTTATTGACTTTGATGACCATAGAGATGCACAGGATGCTATCCGTGAATTAGATGGTAAGAATGGTTGGAGGGTAGAGCTTTCTCACAATTCTAGAGGTGGCGGCGGTGGACGTGGAGGTGGCCGTGGACGCCCTGGTGGTGGTGGTTCTGATTTGAAATGTTATGAGTGTGGTGAACCTGGTCATTTTGCTCGGGAATGTCGCTCACGTGGTGGTTCTGGAAGACGCTATAGTCGCAGTCCACCTCGATTTCGTAGGAGCCCAAGTTATGGGCGAAGGAGTTACAGTCCTCATAGGAGGTCCCCTAGGCGCCGCAGCTTGTCACCCCGTGGACGCAGCTATAGCAGGTCTCCTCCTCCTTACCGTGGGCGCGAGGAACTTAAATATGGTAACGGGAATGGCTTAAGGGATTGA 537 0.5065 MSRVYVGNLDSRVTERELEDEFHVFGVIRSVWVARRPPGYAFIDFDDHRDAQDAIRELDGKNGWRVELSHNSRGGGGGRGGGRGRPGGGGSDLKCYECGEPGHFARECRSRGGSGRRYSRSPPRFRRSPSYGRRSYSPHRRSPRRRSLSPRGRSYSRSPPPYRGREELKYGNGNGLRD* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0980 178 Gene3D - 69 124 - -
Lan15g0980 178 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ22A-LIKE ISOFORM X1 2 173 - -
Lan15g0980 178 Gene3D - 2 68 IPR012677 -
Lan15g0980 178 Pfam Zinc knuckle 94 109 IPR001878 GO:0003676|GO:0008270
Lan15g0980 178 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Lan15g0980 178 MobiDBLite consensus disorder prediction 106 178 - -
Lan15g0980 178 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 173 - -
Lan15g0980 178 MobiDBLite consensus disorder prediction 133 151 - -
Lan15g0980 178 MobiDBLite consensus disorder prediction 66 94 - -
Lan15g0980 178 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Lan15g0980 178 ProSiteProfiles Zinc finger CCHC-type profile. 94 110 IPR001878 GO:0003676|GO:0008270
Lan15g0980 178 SMART c2hcfinal6 94 110 IPR001878 GO:0003676|GO:0008270
Lan15g0980 178 CDD RRM_SRSF3_like 3 71 - -
Lan15g0980 178 SUPERFAMILY Retrovirus zinc finger-like domains 77 115 IPR036875 GO:0003676|GO:0008270
Lan15g0980 178 SUPERFAMILY RNA-binding domain, RBD 3 89 IPR035979 GO:0003676
Lan15g0980 178 SMART rrm1_1 3 69 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0980 Lan-Chr15 19043674 19047051 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0980 4 73 Eukaryotic Initiation Factors Gene Family AT1G71770 35.526 9.01e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0980 K12896 - csin:114261802 207.223