Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0979 ATGAAGCTTAATAATGAGAAGCTATTAAGGTTCTCTGATGATGAAAAACAAAAACTTGAGTTTCAATGGGAAAAGAAAGATGCTAACCAACTCCATGAAGGAAAATTTAATATAAGAATGCCAACATTTGGAAAGTTTAAGGTTTTCCCAGAAAAACATGAGACATGGAAGAAGAGAATTCTTGATCCTGGCAGTGACATGATTTTGGAGTGGAATAGGGCATTTCTGTTTTCTTGCATAATGTCACTTTTTGTTGATCCATTGTTTTTCTACCTTCCCTCTGTAGCAAATGATGGAAATTCATCATGTATGGCTACTGATTTGAACCTAGGAATTGTTGTGACATGTTTCAGAACATTTGCTGATGTTTTCTACTTCCTGAACATGATCATTAAGTTTAGGACAGCTTTTGTGTCACCAAGTTCAAGGGTTTTTGGAAGGGGTGAACTTGTTATGGATCCTAAGTTGATTGCTAGAAGGTATCTGAGATCAGAGTTCTTTCTAGATCTTGTAGCTACACTGCCTCTTCCCCAGATTGTGATTTGGTTTATTTTGCCAGCAATTAGAGGTTCCCATGCTGATCATACCTACAATGCTCTTGTACTAATTGTCCTGCTTCAATATATTCCAAGATTATATTTGATTTTTCCACTAAGCTCTCAGATTGTTAAAGCCACCGGCTTAGTTACGAAGACGGCTTGGGCTGGAGCTGCTTACAATCTTTTACTTTACATGTTAGCAAGTCATGTCTTAGGGGCATCATGGTATTTGTTGTCAATTGAAAGACATGCTACTTGCTGGAAAACTGAATGCAGGAACGAAAGCCTCCCGATAAAATGTACTCTTAAGTACTTGGATTGCGGCAGTTTAGACGATGAAGATCGCATGAAGTGGTTAAATACAACTTCTGTGTTCGGTAACTGCAATCCAGCAAATAGCACCACTTTCACCTATGGAATATTTGGAGTTGCAGTAGAAAATAATGTTATATCCTCTTTGTTTTTAGAGAAGTATCTCTATTGTCTGTGGTGGGGCTTGCAGAACTTGAGTTCCTATGGGCAGGGTTTGAGTACAAGCATATTTGTTTGGGAAACTTCATTTGCAATACTCATAGCTATTCTGGGTCTAGTTTTGTTTGCCCACTTAATTGGTAACATGCAGACATATCTGCAATCTATTACTGTGAGGCTTGAAGAGTGGAGGCTCAAGCAACGTGACACCGAAGAGTGGATGAGACATCGCCAGCTCCCGAAACATCTCCAAGAGCGTATCCGAAGATTTGTTCAATATAAATGGCTTGCAACAAGGGGGGTTGATGAAGAAACAATCTTACAAGGCCTTCCCATAGACCTACGTAGAGATATCCAACGTCACCTTTGCTTGGACCTTGTTCGACGTGTCCCATTTTTCTCACAAATGGATGATCAGCTACTTGATGCAATTTGCGAGCGTTTGGTCTCGTCATTGAGTACTCAAGGCACATACATTGTTAGGGAAGGCGATCCAGTTACGGAGATGCTTTTCATCATTAGAGGGAAACTTGAAAGCTCAACCACAAATGGAGGAAGAACAGGTTTCTTCAACTCTATTACCTTAAGGCCTGGTGATTTCTGTGGAGAAGAGTTACTTGCTTGGGCATTGCTTCCAAACTCTACACTCAACTTGCCTTCTTCTACAAGAACAGTAAAAGCCATCGTCGAAGTCGAAGCTTTTGCACTAAGAGCACAAGATCTTAAATTCGTTGCCAACCAATTTCGACGTTTGCATAGCAAGAAGTTACAACACACGTTCCGGTTCTACTCTCACCATTGGAGGACATGGGCTGCCTGCTTCATTCAGGTAGCTTGGCGCCGACACAAGAAGAGAGAATTGGCGAAGTTCCTTAGCATGAGAGAGTCCCTCTCCTTCAATGCCGATGAACAAGTCAACGATCAAACGGAACATGAGGATGAAGAGTACAATGTTATGGCTTCAAACACAACACAAGTAATACAGAACCTCGGCGTCACTATACTAGCTTCAAGATTCGCTGCAAACACAAGAAGAGGAGCTCAGATCAAACATGTAGAGATGCTGAAGCTGCAAAAGCCTGAAGAGCCAGACTTCTCAGTAGAGCCTGAAGATGATTAG 2130 0.4117 MKLNNEKLLRFSDDEKQKLEFQWEKKDANQLHEGKFNIRMPTFGKFKVFPEKHETWKKRILDPGSDMILEWNRAFLFSCIMSLFVDPLFFYLPSVANDGNSSCMATDLNLGIVVTCFRTFADVFYFLNMIIKFRTAFVSPSSRVFGRGELVMDPKLIARRYLRSEFFLDLVATLPLPQIVIWFILPAIRGSHADHTYNALVLIVLLQYIPRLYLIFPLSSQIVKATGLVTKTAWAGAAYNLLLYMLASHVLGASWYLLSIERHATCWKTECRNESLPIKCTLKYLDCGSLDDEDRMKWLNTTSVFGNCNPANSTTFTYGIFGVAVENNVISSLFLEKYLYCLWWGLQNLSSYGQGLSTSIFVWETSFAILIAILGLVLFAHLIGNMQTYLQSITVRLEEWRLKQRDTEEWMRHRQLPKHLQERIRRFVQYKWLATRGVDEETILQGLPIDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGKLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPNSTLNLPSSTRTVKAIVEVEAFALRAQDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQVAWRRHKKRELAKFLSMRESLSFNADEQVNDQTEHEDEEYNVMASNTTQVIQNLGVTILASRFAANTRRGAQIKHVEMLKLQKPEEPDFSVEPEDD* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0979 709 Gene3D - 89 395 - -
Lan15g0979 709 PRINTS EAG/ELK/ERG potassium channel family signature 129 138 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lan15g0979 709 PRINTS EAG/ELK/ERG potassium channel family signature 338 355 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lan15g0979 709 PRINTS EAG/ELK/ERG potassium channel family signature 364 375 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lan15g0979 709 PRINTS EAG/ELK/ERG potassium channel family signature 382 391 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lan15g0979 709 PRINTS EAG/ELK/ERG potassium channel family signature 432 439 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lan15g0979 709 Gene3D Jelly Rolls 467 587 IPR014710 -
Lan15g0979 709 SUPERFAMILY cAMP-binding domain-like 399 591 IPR018490 -
Lan15g0979 709 Pfam Cyclic nucleotide-binding domain 492 580 IPR000595 -
Lan15g0979 709 Gene3D Helix hairpin bin 397 460 - -
Lan15g0979 709 SUPERFAMILY Voltage-gated potassium channels 65 391 - -
Lan15g0979 709 SMART cnmp_10 469 600 IPR000595 -
Lan15g0979 709 ProSiteProfiles cAMP/cGMP binding motif profile. 469 543 IPR000595 -
Lan15g0979 709 Pfam Ion transport protein 71 396 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lan15g0979 709 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 25 705 - -
Lan15g0979 709 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 25 705 - -
Lan15g0979 709 CDD CAP_ED 469 600 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0979 Lan-Chr15 19037307 19041517 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0979 10 705 Ion Channels AT2G24610 70.112 0.0 1029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0979 K05391 - gmx:100803334 1229.54