Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0978 ATGCAACAGAGGCCAATTTTGCAGCAACAGCATCAGATGTATAACCCTAACATGCTCGCTGCAGCGATGTCTCAGATGGATCCTGTTCCAAGTGGCAACCTGCCTCCTGGTTTTGATGTTTCTGCATGTCGTAGTGTTTATGTAGGGAATATTAATGTAAATGTCACGGATCAGCTCCTCGCAGAAGTTTTTCAGAGTGCTGGTCCTCTTGCTGGATGCAAGCTCATAAGAAAAGAAAAGTCCTCTTATGGTTTTGTGGACTACCATGATAGAGCATCTGCAGCCCTTGCTATAATGACATTGCATGGACGGCAACTATATGGTCAAGCACTTAAGGTGAACTGGGCATATGCCAATAGCAGTAGGGAGGATACTTCAGGGCACTTCAATGTATTTGTTGGTGATTTGAGTCCAGAGGTCACTGATGCAACTTTATATGCATGCTTCTCAGTCTATCATAGTTGTTCTGACGCAAGGGTTATGTGGGATCACAAAACTGGTCGCTCAAAAGGATATGGCTTTGTTTCTTTCCGTGATCATCAGGATGCCCAAAGTGCCATCAATGATATGACAGGTAAATGGCTGGGAAATAGGCAGATACGATGCAATTGGGCAACTAAGGGTGCTGGTGCCAGCTCCGGCGAAGAGAAGAACAATGATAACCAAAATGCTGTTGTGCTTACAAACGGGTCTTCAGATGGAGGTCAAGACTATAACAATGAAGATGCTCCTGAAAACAATCATGCATACACCACTGTTTATGTCGGCAACCTTCCCCATGATGTAACTCAAGCTGAACTTCATTGTCAGTTCCATGCACTGGGTGCTGGGGTTATTGAGGAGGTCCGAGTTCAGAGGGATAAAGGTTTTGGATTTGTCAGGTACAACACTCATGATGAAGCAGCATTGGCCATTCAGATTGGTAATGGAAGTATAGTTCGTGGGAAGAGTATGAAGTGCTCATGGGGTAGCAAGCCAACTCCTCCTGGAACAGCTTCGAATCCCCTACCTCCTCCTGCTCAACCATATCAAATACTTCCCACTGCTGGGATGAACCAAGGCTATTCTCATGCCGAGTTGTTGGCTTACCAGCGCCAACTGGCCATGAGTCAAGCTGCTGTATCTGGCCTTTCCGGCCAAGCCCTTCTGCAAATGACTGGGCAACATGGCCTAGCTCCTGCTTCGATGGGCATAAACTCTGGGGTATCTCAAGCCATGTATGACGCATATACTGGTAATTCATCAAGACAACAGCTTATGTACTATCGTTGA 1272 0.4607 MQQRPILQQQHQMYNPNMLAAAMSQMDPVPSGNLPPGFDVSACRSVYVGNINVNVTDQLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLYACFSVYHSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGASSGEEKNNDNQNAVVLTNGSSDGGQDYNNEDAPENNHAYTTVYVGNLPHDVTQAELHCQFHALGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQIGNGSIVRGKSMKCSWGSKPTPPGTASNPLPPPAQPYQILPTAGMNQGYSHAELLAYQRQLAMSQAAVSGLSGQALLQMTGQHGLAPASMGINSGVSQAMYDAYTGNSSRQQLMYYR* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0978 423 Gene3D - 123 224 IPR012677 -
Lan15g0978 423 Gene3D - 24 122 IPR012677 -
Lan15g0978 423 SUPERFAMILY RNA-binding domain, RBD 27 122 IPR035979 GO:0003676
Lan15g0978 423 SUPERFAMILY RNA-binding domain, RBD 240 334 IPR035979 GO:0003676
Lan15g0978 423 MobiDBLite consensus disorder prediction 208 245 - -
Lan15g0978 423 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 17 420 - -
Lan15g0978 423 CDD RRM2_PUB1 130 204 - -
Lan15g0978 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 207 IPR000504 GO:0003723
Lan15g0978 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 251 325 IPR000504 GO:0003723
Lan15g0978 423 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 17 420 - -
Lan15g0978 423 CDD RRM3_TIA1_like 251 325 - -
Lan15g0978 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 253 318 IPR000504 GO:0003723
Lan15g0978 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 112 IPR000504 GO:0003723
Lan15g0978 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 201 IPR000504 GO:0003723
Lan15g0978 423 SUPERFAMILY RNA-binding domain, RBD 123 230 IPR035979 GO:0003676
Lan15g0978 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 118 IPR000504 GO:0003723
Lan15g0978 423 SMART rrm1_1 252 321 IPR000504 GO:0003723
Lan15g0978 423 SMART rrm1_1 45 114 IPR000504 GO:0003723
Lan15g0978 423 SMART rrm1_1 130 203 IPR000504 GO:0003723
Lan15g0978 423 Gene3D - 230 329 IPR012677 -
Lan15g0978 423 MobiDBLite consensus disorder prediction 212 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0978 Lan-Chr15 19029937 19036727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0978 45 319 Eukaryotic Initiation Factors Gene Family AT3G16380 26.712 4.77e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0978 K13201 - gmx:100777108 805.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0978 15 19029937 19036727 Lan14g0766 14 14570974 14577630 LSH
Lan15g0978 15 19029937 19036727 Lan3g1477 3 26312702 26319314 LSH