Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0945 ATGCATTACCCACCAACCCATATGGAAGTACAAGAGTTTTCCCACAACACCAGCCGTTGTCACCAACATCATTTCCATTCTGACAACAACAACAACATCAACAACGTGGGTTCTTCTGACAATTTCATCGTTGAGGAATTCTTTGATTTTTCCAATGATGATAAAAACCTTAATCTATTTACAGACTCTATGACTGGAAACAACACTGATTCTTCCACTCTTATTGACACCACTAATTCTCTCTCTGTCTCATGTCACCAGAATTTCAATCCTGACATTTTTTCTGACACTAGTTTCCCCGGTGACCTATGTGTCCAGTATGATGACCTTGCGGAGTTAGAATGGCTTTCAAAACTTGAAGAGGAATCATTACCCAATGAGGATTTACAGAAGATGCAGCTCATATCAGGAATCAAAGCTTCAAATGATGATGCATCAAAAAACCATGAATTACAACCTCAACCCAACAACCCAACCAGTCCAGTTTTTAATCCACAAGTGTCAGTTCCAGCCAAGGCCCGCAGCAAACGAACCCGTGTGCCCCCATGCAACTGGACTTCACGTCTCCTTGTCCTCTCCCCAACAATATTGTCTCCGGTCCCTCACCTCGATGATCATATCATCCTCCCACAAAAGCCTGCACCCAAGAGGAGGGACTCGAGTGAGAGGGGAGAGGGCAGGAAGTGCTTGCATTGCGCCACTGGTAAAACTCCTCAGTGGCGCACTGGACCTATGGGCCCAAAGACTCTATGCAATGCATGTGGCGTGAGGTACAAGTCGGGCCGACTCGTGCCTGAATATAGGCCCGCAGCCAGCCCAACTTTCATGATGACAAGGCATTCCAACTCGCACCGTAAGGTGATGGAGCTGCGGCGGCAGAAGGAGATGATGGAAGCCCAAGATCTCCAATTCATTCAGCATCACCAGAATATGAACATGATGTATGATTTCTCATCCAACCGTGATGATTACTTAATTCATCAACATGTGGGCCCTTATTTCACATAG 1008 0.4593 MHYPPTHMEVQEFSHNTSRCHQHHFHSDNNNNINNVGSSDNFIVEEFFDFSNDDKNLNLFTDSMTGNNTDSSTLIDTTNSLSVSCHQNFNPDIFSDTSFPGDLCVQYDDLAELEWLSKLEEESLPNEDLQKMQLISGIKASNDDASKNHELQPQPNNPTSPVFNPQVSVPAKARSKRTRVPPCNWTSRLLVLSPTILSPVPHLDDHIILPQKPAPKRRDSSERGEGRKCLHCATGKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFMMTRHSNSHRKVMELRRQKEMMEAQDLQFIQHHQNMNMMYDFSSNRDDYLIHQHVGPYFT* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0945 335 MobiDBLite consensus disorder prediction 143 178 - -
Lan15g0945 335 ProSitePatterns GATA-type zinc finger domain. 229 254 IPR000679 GO:0006355|GO:0043565
Lan15g0945 335 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 225 287 - -
Lan15g0945 335 PIRSF Txn_fac_GATA_plant 8 320 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lan15g0945 335 Pfam GATA zinc finger 229 262 IPR000679 GO:0006355|GO:0043565
Lan15g0945 335 MobiDBLite consensus disorder prediction 143 166 - -
Lan15g0945 335 SMART GATA_3 223 273 IPR000679 GO:0006355|GO:0043565
Lan15g0945 335 PANTHER GATA TRANSCRIPTION FACTOR 8 335 - -
Lan15g0945 335 CDD ZnF_GATA 228 275 IPR000679 GO:0006355|GO:0043565
Lan15g0945 335 Gene3D - 219 297 IPR013088 GO:0006355|GO:0008270
Lan15g0945 335 ProSiteProfiles GATA-type zinc finger domain profile. 223 259 IPR000679 GO:0006355|GO:0043565
Lan15g0945 335 MobiDBLite consensus disorder prediction 206 226 - -
Lan15g0945 335 MobiDBLite consensus disorder prediction 209 226 - -
Lan15g0945 335 PANTHER GATA TRANSCRIPTION FACTOR 8 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0945 Lan-Chr15 18786221 18787997 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0945 41 334 C2C2-Gata Transcription Factor Family AT5G25830 50.932 1.81e-87 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lan15g0945 GATA 3.3e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0945 - - zju:107420464 348.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0945 15 18786221 18787997 Lan14g0737 14 14363126 14365117 LSH