Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0908 ATGAACTTCACCAATCACTTCCTATTGTTGATGTTTCAGTTCATCCTTGTTTTGGGTCATGCTACTAACCCAGGGGTGCAATTGAAAATTCAAGATAAATATGTTGTATTAGATAATGGCATAGTTCAGGTTACCATAGCAAAACCTGAAGGATATGTCACTGGAATCCAATATAATGGGGTCGATAATTTGCTAGAAGTTCTGAACAATGAAACTGACAGAGGGTACTGGGATATGGTATGGGATGAAGGTGGTAATAAAACAACAGCAAAAGGAAAAAAGGGAAAGGGTAAATTTGAAAGGATGGAAGCCACAAATTTGAAGGTAATAGTGGAAAATGAAGAACAAGTTGAATTATCATTCACCAGAATTTGGAATTCTTCTCTTGAAGGGAAGCATGCACCTCTGAATATTGATAAAAGGTATATATTGCTTCGTGGTTCATCTGGGTTCTATACTTATGCAATTTATGAGCATTTGAAGGAATGGCCAGCGTTTGATATTGACAATACTAGGATTGCTTTCAAGCTTAGGAAAGACAAGTTCCATTACATGGTGGTAGCAGACAACAGACAAAGATTTATGCCTCTGCCTGAGGATCGTGAAAAAGGAAGAGGCCAAATTCTGGATTACCCAGAAGCTATTCTACTTGTGGATCCAGTGGAACCTGAGTTTAAAGGAGAGGTTGACGATAAATATCAATATTCTTGTGAGAGTAGAAACAATGGGGTTCATGGCTGGATATCCTCGAACTCATCTCAACCCACTGGTTTCTGGTTAATTACACCAAGCCCTGAATTCAGATCTGCTGGCCCCCTCAAACAATACATTGCTTCTCACGTTGGCCCCACTTCTCTTTCTGTATTTCATAGCACGCATTATTCGGGATTAGATTTGCTAATGAAATTTGGACCTAATGAGCCATGGAAGAAAGTTTATGGGCCCATATTCATTTACCTTAATTCTCTACATAATGGGGAAAGCCCAACTACCCTATGGAAGGACGCTAAACAACAGATGGTAAATGAAGTTGAGAGTTGGCCCTATACATTTCCAGCTTCAGAGGAATTCCTCTCGTCTAAGCAACGAGGTAAAGTCCAAGGTAGATTGCTTGTCCGAGACAGGTACAACAAGGATGCATCCATCCCAGTTAGCGGTGGTTATATAGGATTGGCATCCCCTGGAGATGTTGGATCATGGCAAAGAGAATCAAAGGGTTATCAATTTTGGACCAGTACTGATGATAAAGGCTATTTTTCAATTATTAACATACGTCCAGGGAGCTATAATCTCTACTCTTGGGTCACTGGATACATTGGTGATTATAAATATGGTCCCATTATTAACGTAACCGCAGGTTCTGAAATTAATGTGGGGGAGCTTGTTTATGAGCCACCAAGAGATGGCCCTACATTGTGGGAAATAGGCATTCCTGATCGTTCAGCTGCTGAGTTTTACGTTCCTGATCCTAATCCCAAATATATTAATAAACTCTATGTTAATCACCCTGACAGGTTTAGACAATATGGCTTGTGGAAGAGATATGCAGATTTGTATCCAAAAGAAGACCTAGTTTACACTGTTAATGTCAGTGACTACCGAAAAGATTGGTTTTTTGCTCATGTCTCAAGGAAGAAAGATAATAACACATACCAAGCAACCACATGGAAAATTAATTTCAATCTTGATCAAGTGCATACCAATGGAACCTATAAGTTGCGAGTGGCTCTGGCATCTATACATCATGCAAATCTACAGGTTCGGATAAACAATTCAGAAGCAAAGCCACCTTTATTTTCAAGTGGACAAATTGGATCAGATAATGCTATAGCAAGACATGGAATTCATGGGCTCTATTGGCTATTCAACATTGAAATACAAGGCAATCTTCTTGTCAAGGGAAACAATACCTTATTTCTAACACAACCAATTAACACAAGTCCTTTTCAAGGAATTTTGTATGATTATATTCGTTTAGAAGGTCCAAGTACAAATCAAAACTAA 2004 0.3892 MNFTNHFLLLMFQFILVLGHATNPGVQLKIQDKYVVLDNGIVQVTIAKPEGYVTGIQYNGVDNLLEVLNNETDRGYWDMVWDEGGNKTTAKGKKGKGKFERMEATNLKVIVENEEQVELSFTRIWNSSLEGKHAPLNIDKRYILLRGSSGFYTYAIYEHLKEWPAFDIDNTRIAFKLRKDKFHYMVVADNRQRFMPLPEDREKGRGQILDYPEAILLVDPVEPEFKGEVDDKYQYSCESRNNGVHGWISSNSSQPTGFWLITPSPEFRSAGPLKQYIASHVGPTSLSVFHSTHYSGLDLLMKFGPNEPWKKVYGPIFIYLNSLHNGESPTTLWKDAKQQMVNEVESWPYTFPASEEFLSSKQRGKVQGRLLVRDRYNKDASIPVSGGYIGLASPGDVGSWQRESKGYQFWTSTDDKGYFSIINIRPGSYNLYSWVTGYIGDYKYGPIINVTAGSEINVGELVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVNHPDRFRQYGLWKRYADLYPKEDLVYTVNVSDYRKDWFFAHVSRKKDNNTYQATTWKINFNLDQVHTNGTYKLRVALASIHHANLQVRINNSEAKPPLFSSGQIGSDNAIARHGIHGLYWLFNIEIQGNLLVKGNNTLFLTQPINTSPFQGILYDYIRLEGPSTNQN* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0908 667 SUPERFAMILY Starch-binding domain-like 386 459 IPR013784 GO:0030246
Lan15g0908 667 Gene3D - 26 299 IPR014718 GO:0030246
Lan15g0908 667 Pfam Polysaccharide lyase family 4, domain II 386 457 IPR029413 -
Lan15g0908 667 Pfam Rhamnogalacturonate lyase family 24 229 IPR010325 -
Lan15g0908 667 SUPERFAMILY Galactose mutarotase-like 36 322 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lan15g0908 667 Gene3D - 469 660 - -
Lan15g0908 667 Gene3D - 359 459 - -
Lan15g0908 667 CDD RGL4_C 473 660 - -
Lan15g0908 667 PANTHER RHAMNOGALACTURONATE LYASE B-LIKE PROTEIN 1 661 - -
Lan15g0908 667 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 661 - -
Lan15g0908 667 SUPERFAMILY Galactose-binding domain-like 468 660 IPR008979 -
Lan15g0908 667 CDD RGL4_N 28 322 - -
Lan15g0908 667 Pfam Polysaccharide lyase family 4, domain III 471 659 IPR029411 -
Lan15g0908 667 CDD RGL4_M 362 461 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0908 Lan-Chr15 18375950 18381422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0908 26 663 Polysaccharide Lyase AT1G09890 64.019 0.0 853
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0908 K18195 - gmx:100786488 1089.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0908 15 18375950 18381422 Lan3g1535 3 26816079 26824831 LSH