Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0893 ATGCCTACTTCACTTTCTTTCAATACCACTTTCTCTTTTTACTCCTTCCTCTTCCTCTTCCTCTTTCTACTCAATTTTCAACACTCCAAACAACAACAAACCCCATTTCATAATCTCAATAATACCCTCAAATCTCCACCACCCTTAGCAAAAACATCTTCTTCGTTTAAACCAGAAGTAGCAGTTATTGTTGCTGTTTTAACAACCATGTTTTCTCTTACCTTTCTTCTCCTTCTTTACATCAAACACTGCAACAATGTCTCCAATCATAACAACAACACTACTAGTTATTATAACTCAACTGCTACCAATTCTCGTGGAAGAAAAAACTCTGGCATTGACCGTTCCGTTATAGAATCATTACCCATTTTCAGATTCGGGTCGTTGATGGGTCAAAAACATGGGTTAGATTGCGCGGTTTGTCTCAACAAATTCGAACCCAGTGAAGTTCTTCGCTTGTTACCGAAATGTAAGCACGCTTTTCATGTTGAATGTGTAGACACATGGCTCGATGCACATTCAACTTGTCCCTTGTGTCGTTATAGGGTAGATCCAGAAGATATTTTCTTATTGCATCATCAAGAACATGTTATAGACATTGAAAAAGAAACAAACCCATCTTCGCAAATTGTTGCAGAAGCACAAAAAACTCGAAGAATCTCAGGGAGACACTCATCAGTAGAAAAAGGTGGGATTTTTCAGATTATAACGGAGCTGAAAACGGCGTCGTTTTTTAGAAGGTCGTTGGATAGTGCAACAGCGAGAAAAAGGAACGAAAACGGTGTCGTTGGTGAAAGAAAAGATGAAATGTTAATGGTGAGGGAAATGGAACGGAGAATAGAGCAGAGGATTATAGTGTGTTCTCCAAGAGATGAACGGTGGAGTGATGTGGAACCGTTGGATTTGTTGTATCTGACGTCAGAGATGATAATAAGTGGGGGAGGAATAGAAACGAGAAGCGTGTCTGAAATGACAGGGTTGAAAAGGTTTATAAGCAGTGATAGTAATAATAACAGAGAGAGTGGTGGACAACGTCATCAACAACGGCGGTAG 1053 0.397 MPTSLSFNTTFSFYSFLFLFLFLLNFQHSKQQQTPFHNLNNTLKSPPPLAKTSSSFKPEVAVIVAVLTTMFSLTFLLLLYIKHCNNVSNHNNNTTSYYNSTATNSRGRKNSGIDRSVIESLPIFRFGSLMGQKHGLDCAVCLNKFEPSEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDIFLLHHQEHVIDIEKETNPSSQIVAEAQKTRRISGRHSSVEKGGIFQIITELKTASFFRRSLDSATARKRNENGVVGERKDEMLMVREMERRIEQRIIVCSPRDERWSDVEPLDLLYLTSEMIISGGGIETRSVSEMTGLKRFISSDSNNNRESGGQRHQQRR* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0893 350 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 32 345 - -
Lan15g0893 350 CDD RING-H2_EL5_like 137 180 - -
Lan15g0893 350 SMART ring_2 138 179 IPR001841 -
Lan15g0893 350 Pfam Ring finger domain 137 180 IPR001841 -
Lan15g0893 350 SUPERFAMILY RING/U-box 118 185 - -
Lan15g0893 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 187 IPR013083 -
Lan15g0893 350 PANTHER RING-H2 FINGER PROTEIN ATL43 32 345 - -
Lan15g0893 350 MobiDBLite consensus disorder prediction 331 350 - -
Lan15g0893 350 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0893 Lan-Chr15 18220940 18222216 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0893 53 349 C3H Transcription Factor Family AT5G05810 47.688 1.81e-77 242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0893 15 18220940 18222216 Lan14g0692 14 13868791 13870356 LSH