Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0882 ATGACTCACTCAAAAACTCAGGCAAGGACCAAGACTAGTGCCATCGCTAACAATCATAGATCTGGGTCAGTCATATACAAAGAATGTCAGAAGAACCATGCTACCATCATTGGTGGCTATGTCTTTGACGGTTGTGGCGAGTTTGCAGCGGCGGGAAAAGAAGGAACTATGGAGGCAGATATTTGTGCAGCATGCAACTGCCACCGTAGTTTCCACCGGAAAGAGATCGAAGGTGTCGTCAACATTAACTCATACGTGCACCATCCTTTGCCGCAGCCACAACCATTGTTGTACACTTGCTACCATCATTTGCCACCACCACCTCCCATCGGTTACCACCACCACATAGTGGCAGCTTCACCATTGTCCCAACATCGTCCCATTGCACTTCCCACCGCACCCGATGGAGATTTCAGCTGTGAAGAAGGTGACATATCGAATCGTAACGACAACGATGATGGAGGCAAAGTCAAGACGAGGTTTAGAACCAAATTCACCATTGGTCAGAAGGATAAGATGCTAGCATTTGTAGAGAAGATTGGGTGGAAAATCCATATACATGATGCTACCGCTGTGGAGCAATTCGGTGCTGAGACTGGTGTGAAGAGACAAGTGCTGAAGGCATGGATTTAA 633 0.4739 MTHSKTQARTKTSAIANNHRSGSVIYKECQKNHATIIGGYVFDGCGEFAAAGKEGTMEADICAACNCHRSFHRKEIEGVVNINSYVHHPLPQPQPLLYTCYHHLPPPPPIGYHHHIVAASPLSQHRPIALPTAPDGDFSCEEGDISNRNDNDDGGKVKTRFRTKFTIGQKDKMLAFVEKIGWKIHIHDATAVEQFGAETGVKRQVLKAWI* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0882 210 Pfam ZF-HD protein dimerisation region 24 76 IPR006456 -
Lan15g0882 210 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 26 76 IPR006456 -
Lan15g0882 210 Gene3D - 143 210 - -
Lan15g0882 210 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 7 210 - -
Lan15g0882 210 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 7 210 - -
Lan15g0882 210 SUPERFAMILY Homeodomain-like 150 209 IPR009057 -
Lan15g0882 210 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 26 75 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0882 Lan-Chr15 18103854 18104750 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0882 24 210 ZF-HD Transcription Factor Family AT4G24660 47.619 2.79e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lan15g0882 ZF-HD_dimer 1.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0882 - - lang:109327886 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0882 15 18103854 18104750 Lan14g0682 14 13757612 13758628 LSH
Lan9g1129 9 18654297 18655459 Lan15g0882 15 18103854 18104750 PCT
Lan15g0882 15 18103854 18104750 Lan9g1129 9 18654297 18655459 PCT