Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0868 ATGGCACTAGAGGCTGTGGTTTTCCCACAATATCCATTTAGTTATGGTTGCAATGAAGATTATTTGTACTCCTTAGTAGGAGAAGGACCTGAAAGTACTGGTGGACATGCATGGATAAAAGACTATGGTTCCCAAACATCAGCAGAACAAGAAAAACTCCTTCTTGGTATTATCAACAACAACATAGAACAAAATCTCCATGCAACTACTTGGGATTCTTCTTCTACCTCGGTGTTGCAAAACGCTAAGGAACAATGGGATTATTTCCACTCTTCCCCTGAGGCTTGCACTGTTGATCAATATCTTACTGAACCTAATTCCTCCTTGGAAGCCACCACAGTGTCCACCACCACCACCGGGAGGCGTAAACGGCGTCGCACTAAGAATGCCAAGAACAAAGAGGAAATTGAGAACCAGAGGATGACCCACATTACAGTTGAGCGCAATCGAAGAAAACAAATGAATGAGTATCTCACTATGCTTCGATCCTTGATGCCTCTCTCTTATGTTCAAAGGGGTGACCAAGCGTCTATTATTGGGGGCGCCATTAATTTTGTGAAGGAGCTAGAGCAACATTTACAATCTATGGAGGGTCAAAAGAAAATTAAACAACCACACGAGAATTTTGGTTTAAATGGATCACTACCTTTTGCTGAGTTCTTCACATTTCCACAGTATACAACATGTGCAAATCAGAGTAACAACAACACATCAGGCACGACCATGGGACAGAAACAAAGGGGAGTGGCAGAGATAGAAGTAACCATGGTGGATAGTCATGCCAACATGAAGATACTGTCAAAGAAATGTTCTGGTCAGCTTATGAAAATGGTTGTTGGACTTCAAAGTCTTAGGCTTGGCATTCTCCACCTTAATGTTACTACTGTGGATGATATGGTACTTTACTCAGTTAGTGTAAAGGTAGAGGAAGGGTGTCAGCTGAACACGGTGGATGAAATTGCAGCAGCTGTGAATCAACTTTTACGCAAAATCCAAGAAGAAGCTGCTTTCAAGTGA 1017 0.4208 MALEAVVFPQYPFSYGCNEDYLYSLVGEGPESTGGHAWIKDYGSQTSAEQEKLLLGIINNNIEQNLHATTWDSSSTSVLQNAKEQWDYFHSSPEACTVDQYLTEPNSSLEATTVSTTTTGRRKRRRTKNAKNKEEIENQRMTHITVERNRRKQMNEYLTMLRSLMPLSYVQRGDQASIIGGAINFVKELEQHLQSMEGQKKIKQPHENFGLNGSLPFAEFFTFPQYTTCANQSNNNTSGTTMGQKQRGVAEIEVTMVDSHANMKILSKKCSGQLMKMVVGLQSLRLGILHLNVTTVDDMVLYSVSVKVEEGCQLNTVDEIAAAVNQLLRKIQEEAAFK* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0868 338 SMART finulus 144 195 IPR011598 GO:0046983
Lan15g0868 338 Pfam Helix-loop-helix DNA-binding domain 139 190 IPR011598 GO:0046983
Lan15g0868 338 Gene3D - 127 212 IPR036638 GO:0046983
Lan15g0868 338 PANTHER MAX DIMERIZATION, MAD 1 336 - -
Lan15g0868 338 CDD bHLH_AtFAMA_like 141 204 - -
Lan15g0868 338 MobiDBLite consensus disorder prediction 111 133 - -
Lan15g0868 338 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 336 - -
Lan15g0868 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 138 189 IPR011598 GO:0046983
Lan15g0868 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 138 204 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0868 Lan-Chr15 17930536 17933325 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0868 1 308 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 47.649 1.34e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan15g0868 HLH 2.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0868 - - gmx:100789380 418.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0454 11 3364515 3366429 Lan15g0868 15 17930536 17933325 PCT
Lan15g0868 15 17930536 17933325 Lan11g0454 11 3364515 3366429 PCT