LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan15g0846	ATGATGACAAATCAGAATGTGGTGGCTCCTAATGATGTGAAGCTTTTGAACTTCAACACAATTTTTGTGATGGCAACTTCCATATCAAATTCAAACTCTAAACTGCAGTCAAATTCAGCAGTGCAGGAACCACTTGTCATGTTTGGTGGACTCTTGAGTCTGACTCAAAGAAATGTTAGGAAAAGGTTGGAGGGAAACAAAGTTCACAATTGGGTTGATTCAATCAGAGCTTCTTCTCCAACTCGTGCCAAATCTACTCTCCAGGCTTCAGAAAACCAAGACAAATTTTCTTGGAATCTGTATCACCCTTCAGCACTGGACATGTTTGATCAGATAATATCTAACTCGAAAGGAAAACAGATTGTAACTTTTCTTGACTATGATGGAACTCTCTCACCTATTGTTGCAGATCCAGAAAAAGCATACATGACTAGCAAGATGAAAGGGACACTAAAGGAAATAGCAAGACATTTTCCTACGGCCATCGTGACCGGAAGGTGCAGAGACAAGGTATATAATTTTGTAAGATTGGCAGAAGTGTATTACGCAGGAAGCCATGGCATGGACATAAAGGGCCCCCAACAAAACCGAAGTCCTAAGAAAGGTAATGATGGAAAAGCAGTGCTATTCCAACCTGCGAGTCAATTCCTGCCAATGATCAACGAGGTGTACAAGATTTTGCAAGAAATAACAAAATCTGTGCCAGGGGCTATGGTTGAGAACAACAAATTTTGTTTGTCCGTGCATTTCCGTTGTGTTGACGAAAAGAGTTGGGCACCATTGGCGGAGAAAGTTAAATTGGTGCTAAATGAGTACCCAAAACTTAAACTAACCCAAGGGAGAAAAGTCCTAGAGATTCGTCCAACCATCAAATGGGACAAGGGCAAGGCTATTGAATTCTTGTTGCATTCACTAGGATATGACAATTCTGATAATGTATTTCCAATCTATATCGGTGATGATCGAACTGACGAAGATGCTTTTAAGGTTTTGCGTAGTAGGGGTCAAGGGATTGGGATTCTTGTTTCTAGATTTCCAAAAGAAACAGATGCTTCTTACACATTGGAAGATCCATCACAGGTTGAGAAATTTTTGAGGCGCTTAGTGGAGTGGAAAAGATCAATCACTGTGACTCGCACTAGTGTATAG	1149	0.4064	MMTNQNVVAPNDVKLLNFNTIFVMATSISNSNSKLQSNSAVQEPLVMFGGLLSLTQRNVRKRLEGNKVHNWVDSIRASSPTRAKSTLQASENQDKFSWNLYHPSALDMFDQIISNSKGKQIVTFLDYDGTLSPIVADPEKAYMTSKMKGTLKEIARHFPTAIVTGRCRDKVYNFVRLAEVYYAGSHGMDIKGPQQNRSPKKGNDGKAVLFQPASQFLPMINEVYKILQEITKSVPGAMVENNKFCLSVHFRCVDEKSWAPLAEKVKLVLNEYPKLKLTQGRKVLEIRPTIKWDKGKAIEFLLHSLGYDNSDNVFPIYIGDDRTDEDAFKVLRSRGQGIGILVSRFPKETDASYTLEDPSQVEKFLRRLVEWKRSITVTRTSV*	383

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lan15g0846	382	Gene3D	-	124	355	IPR023214	-
Lan15g0846	382	PANTHER	TREHALOSE 6-PHOSPHATE PHOSPHATASE	29	375	-	-
Lan15g0846	382	TIGRFAM	T6PP: trehalose-phosphatase	119	369	IPR003337	GO:0003824\|GO:0005992
Lan15g0846	382	PANTHER	TREHALOSE 6-PHOSPHATE PHOSPHATASE	29	375	IPR044651	GO:0004805\|GO:0005992
Lan15g0846	382	CDD	HAD_TPP	124	363	-	-
Lan15g0846	382	Gene3D	-	203	289	-	-
Lan15g0846	382	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	124	333	IPR006379	-
Lan15g0846	382	Pfam	Trehalose-phosphatase	124	359	IPR003337	GO:0003824\|GO:0005992
Lan15g0846	382	SUPERFAMILY	HAD-like	124	373	IPR036412	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan15g0846	Lan-Chr15	17663489	17666130	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan15g0846	117	368	Trehalose Biosynthesis Gene Families	AT1G70290	26.471	4.02e-09	56.6

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan15g0846	K01087		-	gmx:100788641	555.444

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Lan15g0846	15	17663489	17666130	Lan14g0647	14	13412721	13415199	LSH
Lan11g0472	11	3585278	3587904	Lan15g0846	15	17663489	17666130	PCT
Lan9g1114	9	18500014	18503282	Lan15g0846	15	17663489	17666130	PCT
Lan15g0846	15	17663489	17666130	Lan11g0472	11	3585278	3587904	PCT
Lan15g0846	15	17663489	17666130	Lan9g1114	9	18500014	18503282	PCT

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