Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0843 ATGATGGATTTGTTCAACAACATGTCACAGCTTCATTCAGATCCTTTCAGGGGTGAGTTAATGGAAGTTCTTGAAACTTTTATGAAAAGTCCTTCCCCAACTTCAACCCCTTCACTTTCACCTTCTTTTTCTTCATCATCACCTTTCTCAAACTCACCTCAACCTTCTACTTCTTCTTCTTACTCTTACAACACTCCTTCTCCTACTTACTTCAATTCCTCTTCTTTTATCCCAACTCAACACCCAATTGAAAGCTCTTACAATAGCCAAAATATTATTGGCTTTGAGCAATTATGTTCTTCTTCTCCTTCTTCTCTACTTGGCCTCAATCACTTAACCCCTTCTCAGATCAATCAGATCCAGGCTCAGATCCATCTTCAGAATATGCAAAACTTTCAGCAAAACAACACAACTTTCAATTTCCTTAGTCCTAAGCCTATCCCAATGAAGCTTGTGGGTACACCACCAAAACCCATAAAGCTATACAGAGGGGTGAGGCAAAGACACTGGGGAAAATGGGTTGCTGAGATTAGACTACCAAAAAATAGAACGAGGCTTTGGCTTGGTACCTTTGACACTGCTGAAGAAGCTGCTTTGGCTTATGATAAAGCTGCTTATAAGCTCAGAGGTGACTTTGCTAGGCTCAACTTTCCAAATCTTAAGCACCAAGGTTCTTGTGTTGGTGATGAGTTTGGTGGTGAGTACAAGCCTCTTCATTCCTCTGTTGATGCGAAGCTTCAAGCTATTTGTGAAGGCTTGGCTGATATGCAAAAACAAGGGAAGTCAGAGAAGAAGTCTAAGGCTGTGATCTCTTCAAAGAGATCAAAATCAAAACTTGGTTCTAAGATGGCTCAGCCAGAAAAATCTGTGTCACTTGATGTGAAGGGATTGGAGGAGAACTCTTGCAAGGTGGAAACTTTCTCTTTGTCTTCAGTGATGACAGAGAGTGAAGGATCTGAAGGTTCTTCACCCCTTTCAGATCTTACATTTGCTGATGTTAATGAGCCTCAGTGGGAAGGTCCTTCGGATAATTTAAATTTGCAAAAGTACCCTTCTTATGAGATTGATTGGGATTCTCTGTGA 1083 0.409 MMDLFNNMSQLHSDPFRGELMEVLETFMKSPSPTSTPSLSPSFSSSSPFSNSPQPSTSSSYSYNTPSPTYFNSSSFIPTQHPIESSYNSQNIIGFEQLCSSSPSSLLGLNHLTPSQINQIQAQIHLQNMQNFQQNNTTFNFLSPKPIPMKLVGTPPKPIKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLKHQGSCVGDEFGGEYKPLHSSVDAKLQAICEGLADMQKQGKSEKKSKAVISSKRSKSKLGSKMAQPEKSVSLDVKGLEENSCKVETFSLSSVMTESEGSEGSSPLSDLTFADVNEPQWEGPSDNLNLQKYPSYEIDWDSL* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0843 360 MobiDBLite consensus disorder prediction 29 63 - -
Lan15g0843 360 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 359 - -
Lan15g0843 360 MobiDBLite consensus disorder prediction 261 287 - -
Lan15g0843 360 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 359 - -
Lan15g0843 360 Pfam AP2 domain 162 210 IPR001471 GO:0003700|GO:0006355
Lan15g0843 360 PRINTS Ethylene responsive element binding protein signature 162 173 IPR001471 GO:0003700|GO:0006355
Lan15g0843 360 PRINTS Ethylene responsive element binding protein signature 184 200 IPR001471 GO:0003700|GO:0006355
Lan15g0843 360 SUPERFAMILY DNA-binding domain 161 218 IPR016177 GO:0003677
Lan15g0843 360 ProSiteProfiles AP2/ERF domain profile. 161 218 IPR001471 GO:0003700|GO:0006355
Lan15g0843 360 CDD AP2 160 220 IPR001471 GO:0003700|GO:0006355
Lan15g0843 360 MobiDBLite consensus disorder prediction 313 330 - -
Lan15g0843 360 SMART rav1_2 161 224 IPR001471 GO:0003700|GO:0006355
Lan15g0843 360 MobiDBLite consensus disorder prediction 313 345 - -
Lan15g0843 360 Gene3D AP2/ERF domain 161 219 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0843 Lan-Chr15 17643013 17653566 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0843 105 360 AP2-EREBP Transcription Factor Family AT1G78080 60.741 5.81e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan15g0843 AP2 8.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0843 K09286 - gmx:100800478 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0843 15 17643013 17653566 Lan14g0645 14 13384605 13386440 LSH
Lan2g0918 2 19826527 19828188 Lan15g0843 15 17643013 17653566 PCT
Lan11g0474 11 3611704 3613568 Lan15g0843 15 17643013 17653566 PCT
Lan9g1112 9 18477692 18479258 Lan15g0843 15 17643013 17653566 PCT
Lan15g0843 15 17643013 17653566 Lan2g0918 2 19826527 19828188 PCT
Lan15g0843 15 17643013 17653566 Lan11g0474 11 3611704 3613568 PCT
Lan15g0843 15 17643013 17653566 Lan9g1112 9 18477692 18479258 PCT