Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan15g0818 | ATGGCACAAATGGTTGCAATGCCTTTAGCTCCTTCACTTACTCTCATCTCCAATCCCAAATCTCTTTCAACCAGATTCTCCGTTTCTCTTCCTAACCCTCCCAAGGTTCAGGGATTGAGTATAAGATGTGTTCGTGTTGGAGGAGTGGAGATTCCAAACAACAAGAGAATTGAGTTTTCATTGCAGTACATTCATGGAGTTGGAAGGAATATAGCTCGTCAAATTCTAACTGATATAAGCATGGATAATAAAATCACTAAGGAGCTTACTGAGGAAGATCTCATTACACTCAGGGATGAAGTTTCCAAATACATGATTGAAGGCGACCTGAGACGGTTTAATGCGCTTAATATAAGGAGACTGAAAGAGATCCAGTGCTACAGAGGAATAAGGCATATTCAAGGGCTTCCTTGCAGAGGACAGCGTACCAAGAACAATTGCAGGACCTTGAAGGGTAAGAGGGTTGCCATTCCTGGCAAGAAGAAAAAGTAA | 492 | 0.4187 | MAQMVAMPLAPSLTLISNPKSLSTRFSVSLPNPPKVQGLSIRCVRVGGVEIPNNKRIEFSLQYIHGVGRNIARQILTDISMDNKITKELTEEDLITLRDEVSKYMIEGDLRRFNALNIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKRVAIPGKKKK* | 164 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan15g0818 | 163 | ProSiteProfiles | Ribosomal protein S13 family profile. | 46 | 152 | IPR001892 | GO:0003723|GO:0003735|GO:0005840|GO:0006412 | |
| Lan15g0818 | 163 | Gene3D | - | 44 | 112 | - | - | |
| Lan15g0818 | 163 | PANTHER | 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 | 1 | 162 | - | - | |
| Lan15g0818 | 163 | Gene3D | 30s ribosomal protein s13, domain 2 | 113 | 163 | IPR027437 | - | |
| Lan15g0818 | 163 | SUPERFAMILY | S13-like H2TH domain | 44 | 155 | IPR010979 | GO:0003676 | |
| Lan15g0818 | 163 | ProSitePatterns | Ribosomal protein S13 signature. | 128 | 141 | IPR018269 | GO:0003723|GO:0003735|GO:0005840|GO:0006412 | |
| Lan15g0818 | 163 | Pfam | Ribosomal protein S13/S18 | 45 | 149 | IPR001892 | GO:0003723|GO:0003735|GO:0005840|GO:0006412 | |
| Lan15g0818 | 163 | TIGRFAM | uS13_bact: ribosomal protein uS13 | 45 | 154 | IPR019980 | GO:0003723|GO:0003735|GO:0005840|GO:0006412 | |
| Lan15g0818 | 163 | Hamap | 30S ribosomal protein S13 [rpsM]. | 43 | 159 | IPR001892 | GO:0003723|GO:0003735|GO:0005840|GO:0006412 | |
| Lan15g0818 | 163 | PANTHER | 37S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIAL | 1 | 162 | IPR019980 | GO:0003723|GO:0003735|GO:0005840|GO:0006412 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan15g0818 | 44 | 161 | Cytoplasmic Ribosomal Protein Gene Family | AT4G09800 | 29.577 | 1.59e-07 | 46.6 |