Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0796 ATGGATGAGGAGAGAAAGCAAACTTCCCACAAAACACCATACACTGAATTTGAGCAAGTTAACTATGATTTTATTCTAGAAATTAGCTTGCAAGAACAAGAGGGAACATTGACAACTCTAGCAACAATTGAAAGAGGAAGTGAAACTGATGAATATGTAAGTGAGTCCTCTTTTGATGATGCAAATGATGGTTTTTCAGAAAGCCAAGAGTTTGAAGCCTTTCTTGAAGGTGAAGGAAGCAATTATGATGTAATGGAAGAAGATGAGATTGACCCAGATGAATTATCTTATGAGGAGTTACTTGAGTTAGGAGAGTTTGTAGGTAAAGAGAATAAAGGTTTAACAAGAAATGAAATTTCTTCATGCTTATACCCTTATACTTTTCAATCTGCTGCAAGAAAAAGTGGAATAGAAAGGTGTGTGATTTGTCAGGTTGAGTATGAAGAAGGTGAAGCCCTTGTGGCACTTCAATGTGAGCACCCTTACCATACAGATTGCATAATCAAGTGGCTTCAAATTAAGAAGGTTTGTCCAATATGTAGCAATGAAGTTTCAGCTCCTAAGATGGCTTATAACAAGAATTCCTGA 588 0.3639 MDEERKQTSHKTPYTEFEQVNYDFILEISLQEQEGTLTTLATIERGSETDEYVSESSFDDANDGFSESQEFEAFLEGEGSNYDVMEEDEIDPDELSYEELLELGEFVGKENKGLTRNEISSCLYPYTFQSAARKSGIERCVICQVEYEEGEALVALQCEHPYHTDCIIKWLQIKKVCPICSNEVSAPKMAYNKNS* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0796 195 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Lan15g0796 195 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 2 189 - -
Lan15g0796 195 Pfam Ring finger domain 139 180 IPR001841 -
Lan15g0796 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 189 IPR013083 -
Lan15g0796 195 SUPERFAMILY RING/U-box 139 187 - -
Lan15g0796 195 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 2 189 IPR045191 GO:0061630
Lan15g0796 195 SMART ring_2 140 180 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0796 Lan-Chr15 17120030 17121129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0796 84 184 C3H Transcription Factor Family AT3G63530 51.456 4.63e-30 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0796 K19045 - gmx:100526881 252.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0796 15 17120030 17121129 Lan3g1597 3 27597528 27598545 LSH