Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0715 ATGGATGACAGCTTTTCTGATATTTTTGAGGACAAAGAGTTTGGTGGTGATGATCTCTTTGCCATTTTGGAAAGCTTAGAAGACTTCACTACTGATTTTCCTCTCATTAACGAACCTGTTATTGGTTCCTCAACTTTAATAAAAGAGGGTGAAGAAACATCGAGATTTGTGTCACAGAAGTCAACCTCTTCAAGTGTTCAAGTACAAAAACAACATGGTTCAGAAGAAACTGAGCTTGAAACCTCGCCAAAAAGTAAGAGACAGAAAGTTTTTACTAACACTGAGACAGAAGAAGCAAACCAAGATGGGCAACAAAGGATTTCTCACATTACAGTGGAGCGCAACAGAAGAAAGCAAATGAATGAGCACTTGTCTGTGTTAAGGTCACTTATGCCTTGTTTTTATGTCAAAAGAGGAGATCAAGCATCAATAATTGGAGGGGTGGTTGATTACATCAACGAATTGCAGCAGGTACTACAAGCCCTGGAGGCCAAGAAACAAAGAAAAGTTTACACCGACGTACTAAGTCCTAGGCTAGTTTGTTCAAGCCCAAGGCCTTCACCACTTAGTCCAAGAAAACCACCACTGAGCCCTAGACTAAACCTTCCCATTAGTCCAAGGACTCCACAACCAGGTAGTCCTTACAAGCCAAGGTTGCAACCAACAGGTTACACCATTTCACCAACCATATCAAACTCTCTTGAGCCATCTCCTACTTCTTCAGCTAATTCCTCTATCAATGATAACATCAATGAGCTTGTTGCTAATTCCAAGTCCCCTATTGCTGACGTGGAGGTCAAGTTTTCAGGTCCACATCTTCTTTTGAAGACTGTTTCTCAAAGAATTCCCGGGCAAGCTTTGAAGATTATGTTAGCACTTGAAGAACTTGCACTCGAGATTCTCCATGTTAACATTAGCACTGCCGATGAAACCATGCTGAACTCATTCACTATCAAGATTGGAATTGAATGCCAACTCAGTGCTGAAGAACTCGCTCAACAAATTCAGCAAACATTCTGCTAA 1023 0.4115 MDDSFSDIFEDKEFGGDDLFAILESLEDFTTDFPLINEPVIGSSTLIKEGEETSRFVSQKSTSSSVQVQKQHGSEETELETSPKSKRQKVFTNTETEEANQDGQQRISHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQVLQALEAKKQRKVYTDVLSPRLVCSSPRPSPLSPRKPPLSPRLNLPISPRTPQPGSPYKPRLQPTGYTISPTISNSLEPSPTSSANSSINDNINELVANSKSPIADVEVKFSGPHLLLKTVSQRIPGQALKIMLALEELALEILHVNISTADETMLNSFTIKIGIECQLSAEELAQQIQQTFC* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0715 340 Coils Coil 148 172 - -
Lan15g0715 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 104 155 IPR011598 GO:0046983
Lan15g0715 340 MobiDBLite consensus disorder prediction 56 72 - -
Lan15g0715 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 103 171 IPR036638 GO:0046983
Lan15g0715 340 PANTHER TRANSCRIPTION FACTOR FAMA 5 340 IPR044283 GO:0003700|GO:0010052
Lan15g0715 340 SMART finulus 110 161 IPR011598 GO:0046983
Lan15g0715 340 MobiDBLite consensus disorder prediction 220 245 - -
Lan15g0715 340 Pfam Helix-loop-helix DNA-binding domain 105 156 IPR011598 GO:0046983
Lan15g0715 340 PANTHER - 5 340 - -
Lan15g0715 340 MobiDBLite consensus disorder prediction 187 216 - -
Lan15g0715 340 CDD bHLH_AtFAMA_like 107 178 - -
Lan15g0715 340 Gene3D - 94 169 IPR036638 GO:0046983
Lan15g0715 340 MobiDBLite consensus disorder prediction 56 105 - -
Lan15g0715 340 MobiDBLite consensus disorder prediction 73 93 - -
Lan15g0715 340 MobiDBLite consensus disorder prediction 180 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0715 Lan-Chr15 15955075 15958411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0715 9 320 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 51.124 3.92e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan15g0715 HLH 1.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0715 K20558 - gmx:100808130 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0715 15 15955075 15958411 Lan14g0552 14 11708425 11712431 LSH