Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0704 ATGGGTCGTAGGAAGATTGAAATCAAGATGGTGAAGGATCTGAACACAAGGCAAGTAACCTTTTCTAAGCGTAGATCAGGCTTATTTAAGAAAGCTAATGAGTTATCTATCATGTGTGGTTGTGAACTTGCTATTGTTATGTTCTCTCATGGGAACAAGCCTTACTCTTATGGCCACCCAAATGTTGATTCTGTTGCAGCCAAAATTCTTCATCAAGAACTTAACTCAAGTGCTGTTCAATGTGACTCATCTTCTAATGATGAAACCTTGAACAAGTTGAGTCAAGAACTTGATGATATTTTGGATCAAACTTATGAGGAGGAAAAGAAAGGTGAGGAGCTTGATAAGCTCATAGAGCAAAAAAAGAAGGAACTTGAGAAGGTTGAAGATTTGAGTGTTTATGAGGAAATGAGGAGGAGCATTAAGGAACGTATTAATGAGATGGAGGCTGTGGAAGCTATGCTGATGATTAAAGAACAAGAACCAATAGTGTAA 495 0.3778 MGRRKIEIKMVKDLNTRQVTFSKRRSGLFKKANELSIMCGCELAIVMFSHGNKPYSYGHPNVDSVAAKILHQELNSSAVQCDSSSNDETLNKLSQELDDILDQTYEEEKKGEELDKLIEQKKKELEKVEDLSVYEEMRRSIKERINEMEAVEAMLMIKEQEPIV* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0704 164 Coils Coil 111 154 - -
Lan15g0704 164 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan15g0704 164 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan15g0704 164 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan15g0704 164 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan15g0704 164 Gene3D - 14 88 IPR036879 GO:0003677|GO:0046983
Lan15g0704 164 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 159 - -
Lan15g0704 164 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lan15g0704 164 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Lan15g0704 164 PANTHER MADS BOX PROTEIN 2 159 - -
Lan15g0704 164 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0704 Lan-Chr15 15753511 15754288 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0704 1 157 Type I MADS-box Gene Family AT2G34440 42.353 2.06e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan15g0704 SRF-TF 3.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0704 - - lang:109342374 172.94