Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0688 ATGATCATCAAGCGCAACCTGAAATCCCAAATGCCGAGTGTGAAACGGAGCAAACTCAGTGACTCGGTTGGTGAAAAGGATGAGTGTTCTTATGCTCGTAAGAGGAGGAAGAAGACGAGTAACGATTACTACCCTTTGAACCTTCTCGGCGACATCTTCACCGGCGAAATTCCGGTGAGCTTTCATGGCCTTCTGACAGAGAATGGATTCTCTGCTTCGTTGTTCACTGAAGTTTCGTGCTCACCGCCCTGCGAAGTGGATTCGAATTCGAAGGGTGGTGGCAGTGGCAGTGGTGATGGTGGTAGTGACGCTAAGAAGATTCGGGGCGGTGGCGAGGCTCAGCGTCCGCCACTGGTTAGGACCTCAAGGGGAAGGGTTCAGGTGCTGCCGTCACGGTTCAATGATTCTGTTATTGATAATTGGAGGAAAGACAGCAAGAGCAGCTTGCGTGATTGTGAATTTGATGATGAATTTGAACCCAAGAGAGGGAAATTGGGTTTCAAAGCACCGAAAAATTGCAATCAGAACGCGAAAAAATTGCGAAAGGATGAGAAAATCGGTTACAAGCCTCAAAAGTATTCAGCATTGTGTGAGGAGAAAGCAAGGAAGGATGTTGGTGTGAGGTTTAGGAGTTTTGATGAGAGAGAGAGGTTTGTGGAGATGGAAGGAGTTGAGTCAATGGGAAATGAGAGAGTTTTGAAGGAAATTCGGGAGAGGAAAGATGGGTTGTATGGACCAGAAGATTTTTATGCAGGTGATATAGTGTGGGCCAAAGCAAGGAGAAGGGAACCTTTTTGGCCAGCCATTGTGATTGATCCTATGTCTCAGGCACCTGAACTGGTTCTAAGGTCTTGTGTAGCTGATGCAGCTTGTGTAATGTTTCTCGGGTTCGCAGGCAATAAAAATCAAAGGGACTATGGATGGGTGAAGGATGGGATGATTTTTCCATTTATGGATAATGTAGACAGGTTTCAGGAGCAGTCGGAATTCATTTACTATAATCCTTCTCAACTCCAAGTGGCTATAGAAGAGGCATTTTTGGCAGACCAGGGCCACACAGAAAAGTTGATAGCAGATATAAATTCAGCAGCTGCTAACACTGATATTGATGATACTATTCTGAAAGTCCTTCGGGAGGACACTGGTCCAAACCAGTATGCAAGATATCACTTTCTGGACCAGGATTTATTTGATAAGAAGGATACACGATCATGTGAAGCCTGTGGGTTGGCCCTTCCTTTCAAAATGTCCAAGAAAACAAAGGATTCCACTCCTGGTGGCCAATTCTTATGTAAAACATGCGCCAGGTTAACAAAGTCAAATCATTATTGTGGCATATGCAAGAAAGTTTGGAATCATTCAGATAGTGGTAGCTGGGTGCGCTGTGATGGGTGTAAAGTCTGGGTGCATGCAGAATGTGACAAAATTTCCAGGAGCATTTTCAAGAACCTTGAAGGCACTGATTATTTCTGCCCGACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAATTACGGTCAAAAGCCAAGTGTAACAAAAACAGTGGGCAGCTAGTGCTTCCGAAGAAGGTCACTGTTCTCTGCAATGGTATAGAAGGCATATATTTTCCGAGCCTTCACTTAGTTGTGTGCAAGTGTGACTTTTGTGGGACAGAAAAGCTAGCACTTAGCGAATGGGAAAAACACACAGGTTCCAAATTAAGGAATTGGAAGACAAGTATTCGGGTGAAGGACTCCATGCTGCCACTGGAACAATGGATGTTGAAGTTGGCAGAATTTCATGCTAAGGCTGTAGTTTCTGTCAAACCTAAAAAACCTTCTCTAAAAGAAAGGAAGCATAAGTTGCTTACCTTCTTGCGAGAGAAATATGAACCTGTTCATGCTAAGTGGACTACAGAACGTTGTGCTGTATGTAGATGGGTTGAAGACTGGGATTACAACAAAATTATCATTTGCAACAGATGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTTAAGGACTTTACATCTTGGGTTTGCAAGGCTTGTGAAACACCTCACATAAAGAGGGAGTGTTGTCTTTGCCCTGTGAAAGGTGGTGCACTAAAGCCAACTGATATTGATACATTATGGGTTCATGTCACATGTGCTTGGTTTCAACCACAAGTCTCTTTTCCTAGTGATGAGAAGATGGAGCCTGCTTTGGGTATTCTTAGTATTCCATCAAATTCTTTTGTCAAGATTTGTGTTATCTGCAAACAAATCCATGGTTCATGTACACAATGTTGCAAGTGTTCCACATATTTTCATACTATGTGTGCATCTAGAGCTGGATATCGCATGGAGATGCATTGTTCAGAAAAAAATGGTAGGCAAACAACAAAATGGGTTTCTTATTGTGCTTACCACAGGGCTCCCAATCCTGACAATGTCTTGATAGTACAAACTCCTAATGGGATCATTTCAACTAAAAGCCTCCTCAAAAATAAGAAAAAGGGTGGATCAAGGCTGATTGCATCAAATAAAATGAAGCAAGATGACACTTCTCCCGTGGATAACACCGAGGATGAACCATTCTCTGCTGCTCGGTGCCGTATTTTCCGGAGAACAAATCATACAAAAAAGAGAGCAGCAGATGAAGCCATTTTTCATCAAGTGAGGGGTCCCCACCACCATCCTTTAGATGCAATACAGAGATTAAATAAATACAGAAATGTGGAAGAGGAACCCAGGTCATTTTCTTCTTTCAGAGAGCGCCTTCGTCACTTACAGAAAACCGAAGATGAACGCGTTTGCTTTGGTAGATCGGGCATACATGGATGGGGCCTCTTTGCACGCAGAGATATTCAAGAAGGAGAAATGGTTCTTGAGTATCGCGGTGAACAAGTGAGGGGCAGCATTGCAGATCTGAGGGAGGCACGCTATAGATTAGAAGGCAAAGACTGCTATCTATTTAAGATAAGTGAAGAAGTGGTGGTAGATGCCACTGATAAAGGAAATATAGCACGGCTAATCAATCATTCTTGTATGCCGAATTGCTATGCAAGAATTATGTGTGTAGGTGACGATGAAAGTCGGATTGTACTCATTGCTAAGACTAAAGTATCTGCTGGCGATGAATTGACGTATGACTACTTATTTGATCCTGATGAGCCAGATGAATCAAAAGTACCTTGTCTATGTAAAGCTCCAAACTGCCGGAAATTCATGAATTAG 3216 0.4282 MIIKRNLKSQMPSVKRSKLSDSVGEKDECSYARKRRKKTSNDYYPLNLLGDIFTGEIPVSFHGLLTENGFSASLFTEVSCSPPCEVDSNSKGGGSGSGDGGSDAKKIRGGGEAQRPPLVRTSRGRVQVLPSRFNDSVIDNWRKDSKSSLRDCEFDDEFEPKRGKLGFKAPKNCNQNAKKLRKDEKIGYKPQKYSALCEEKARKDVGVRFRSFDERERFVEMEGVESMGNERVLKEIRERKDGLYGPEDFYAGDIVWAKARRREPFWPAIVIDPMSQAPELVLRSCVADAACVMFLGFAGNKNQRDYGWVKDGMIFPFMDNVDRFQEQSEFIYYNPSQLQVAIEEAFLADQGHTEKLIADINSAAANTDIDDTILKVLREDTGPNQYARYHFLDQDLFDKKDTRSCEACGLALPFKMSKKTKDSTPGGQFLCKTCARLTKSNHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDKISRSIFKNLEGTDYFCPTCKAKFDFELSDSEKLRSKAKCNKNSGQLVLPKKVTVLCNGIEGIYFPSLHLVVCKCDFCGTEKLALSEWEKHTGSKLRNWKTSIRVKDSMLPLEQWMLKLAEFHAKAVVSVKPKKPSLKERKHKLLTFLREKYEPVHAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVKDFTSWVCKACETPHIKRECCLCPVKGGALKPTDIDTLWVHVTCAWFQPQVSFPSDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHTMCASRAGYRMEMHCSEKNGRQTTKWVSYCAYHRAPNPDNVLIVQTPNGIISTKSLLKNKKKGGSRLIASNKMKQDDTSPVDNTEDEPFSAARCRIFRRTNHTKKRAADEAIFHQVRGPHHHPLDAIQRLNKYRNVEEEPRSFSSFRERLRHLQKTEDERVCFGRSGIHGWGLFARRDIQEGEMVLEYRGEQVRGSIADLREARYRLEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMCVGDDESRIVLIAKTKVSAGDELTYDYLFDPDEPDESKVPCLCKAPNCRKFMN* 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0688 1071 ProSiteProfiles SET domain profile. 929 1046 IPR001214 GO:0005515
Lan15g0688 1071 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 438 498 IPR013083 -
Lan15g0688 1071 SUPERFAMILY FYVE/PHD zinc finger 635 700 IPR011011 -
Lan15g0688 1071 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1071 IPR025780 -
Lan15g0688 1071 PANTHER PHD FINGER PROTEINS 1 1071 - -
Lan15g0688 1071 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 1071 - -
Lan15g0688 1071 ProSiteProfiles Extended PHD (ePHD) domain profile. 689 804 IPR034732 -
Lan15g0688 1071 ProSitePatterns Zinc finger PHD-type signature. 638 683 IPR019786 -
Lan15g0688 1071 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 625 686 IPR013083 -
Lan15g0688 1071 SMART set_7 929 1052 IPR001214 GO:0005515
Lan15g0688 1071 SUPERFAMILY FYVE/PHD zinc finger 440 498 IPR011011 -
Lan15g0688 1071 Pfam SET domain 940 1045 IPR001214 GO:0005515
Lan15g0688 1071 SUPERFAMILY SET domain 919 1071 IPR046341 -
Lan15g0688 1071 CDD PHD_TCF19_like 444 494 - -
Lan15g0688 1071 CDD ePHD_ATX3_4_5_like 692 803 IPR041955 -
Lan15g0688 1071 MobiDBLite consensus disorder prediction 1 27 - -
Lan15g0688 1071 Gene3D - 246 353 - -
Lan15g0688 1071 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 687 806 IPR013083 -
Lan15g0688 1071 Pfam PHD-zinc-finger like domain 691 803 - -
Lan15g0688 1071 Pfam PHD-finger 443 496 IPR019787 -
Lan15g0688 1071 Pfam PWWP domain 252 345 IPR000313 -
Lan15g0688 1071 ProSiteProfiles Post-SET domain profile. 1055 1071 IPR003616 -
Lan15g0688 1071 SMART PostSET_3 1055 1071 IPR003616 -
Lan15g0688 1071 CDD SET_SETD1-like 916 1067 - -
Lan15g0688 1071 SUPERFAMILY Tudor/PWWP/MBT 244 350 - -
Lan15g0688 1071 Pfam PHD-finger 650 684 - -
Lan15g0688 1071 SMART PHD_3 637 684 IPR001965 -
Lan15g0688 1071 SMART PHD_3 443 495 IPR001965 -
Lan15g0688 1071 SMART PHD_3 748 804 IPR001965 -
Lan15g0688 1071 ProSiteProfiles Zinc finger PHD-type profile. 441 497 IPR019787 -
Lan15g0688 1071 MobiDBLite consensus disorder prediction 86 125 - -
Lan15g0688 1071 Gene3D SET domain 822 1071 IPR046341 -
Lan15g0688 1071 ProSiteProfiles Zinc finger PHD-type profile. 635 686 IPR019787 -
Lan15g0688 1071 ProSiteProfiles PWWP domain profile. 251 320 IPR000313 -
Lan15g0688 1071 CDD PHD_ATX3_4_5_like 637 683 IPR042011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0688 Lan-Chr15 15543615 15553193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0688 638 803 C2H2 Transcription Factor Family AT3G14740 32.948 1.29e-19 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan15g0688 zf-HC5HC2H_2 3.1e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0688 - - aprc:113853254 1744.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0688 15 15543615 15553193 Lan14g0537 14 11085540 11095003 LSH
Lan15g0688 15 15543615 15553193 Lan3g0820 3 15566537 15575474 LSH