Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0681 ATGGATTTGGACAGCATTGAATGTGTGTCATACTCTGATGGCATGGATGAGGATGAGATCCATCTACACCATCATCACTCTGAGTTTTCTTCCACAAAACCTCGTAATGGAAGTACCAATCACAATATTTCCATGGTTTCAACGGCCATTGCTCCTGCAACCAGTGTCCATGAATTGCTTGAATGCCCTGTTTGTACCAATTCAATGTACCCTCCAATTCATCAGTGCCACAATGGCCACACACTGTGTTCCACTTGTAAAACGAGGGTGCACAACCGATGTCCCACTTGTAGACAAGAGCTTGGAGATATTAGGTGTTTGGCACTGGAGAAAGTGGCTGAATCACTTGAGTTACCTTGCAAGTTCTACTCCCTTGGATGTCCAGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAGACGGTATGCAATTTTAGGCCGTACAGTTGTCCTTATGCCGGATCAGACTGTTCTGTTGTTGGGGACATTCCCTTCCTCGTTGCACATTTGAGGGATGATCATAAGGTGGATATGCACACAGGATGCACATTCAATCATCGTTATGTGAAGTCAAATCCGCGTGAAGTAGAGAATGCAACCTGGATGCTCACGGTGTTTCATTGTTTTGGCCAATACTTCTGCCTTCACTTTGAAGCTTTCCAGCTTGGCATTGCCCCTGTTTACATGGCATTCCTTCGTTTCATGGGCGATGAGAATGAGGCTCGGAACTATAGCTATAGCCTAGAGGTCGGGGGCAATGGCAGGAAACTCATGTGGGAAGGTATGCCAAGAAGTGTTCGGGATAGTCACCGTAAAGTCAGGGATAGTCACGACGGCCTCATTATCCAACGAAATATGGCACTATTTTTCTCTGGTGGGGATAAGAAGGAGCTGAAACTCAGAGTTACAGGAAGAATATGGAAAGGACAACAGAATTCAGATGAGGGTGTGCATACCAAATCTTTGTAG 969 0.453 MDLDSIECVSYSDGMDEDEIHLHHHHSEFSSTKPRNGSTNHNISMVSTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKFYSLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSDCSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGIAPVYMAFLRFMGDENEARNYSYSLEVGGNGRKLMWEGMPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDKKELKLRVTGRIWKGQQNSDEGVHTKSL* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0681 322 CDD RING-HC_SIAHs 60 98 - -
Lan15g0681 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 114 IPR013083 -
Lan15g0681 322 ProSiteProfiles Zinc finger SIAH-type profile. 115 175 IPR013010 GO:0008270
Lan15g0681 322 SUPERFAMILY TRAF domain-like 115 307 - -
Lan15g0681 322 ProSiteProfiles Zinc finger RING-type profile. 62 98 IPR001841 -
Lan15g0681 322 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 315 - -
Lan15g0681 322 SUPERFAMILY RING/U-box 54 101 - -
Lan15g0681 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 168 IPR013083 -
Lan15g0681 322 CDD Sina 176 304 - -
Lan15g0681 322 Pfam Seven in absentia protein family 104 303 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lan15g0681 322 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 169 303 IPR008974 GO:0005515
Lan15g0681 322 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0681 Lan-Chr15 15478581 15483434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0681 53 308 C3H Transcription Factor Family AT2G41980 80.469 3.14e-161 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0681 K04506 - gmx:100810573 623.239