Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0678 ATGGGGAAGAAAGGAAGTAGTTGGTTCTCATCTGTAAAGAAAGTTTTCAAGTCATCTTCTAAGGATTCTACTGTGCCAGACAAGAAGGACAAAGAAGAGAAATGGCAACATGAAGCACAAGAGGTTGTGACTTTTGAGCATTTTCCAGTAGAGAGTTCACCTGATGCCACCAATGAGGGGAGTATCACATCCACACCTGTCACTGAAGATAGAAATCATGCCATTGCCTTTGCAGAGGCAACCGCCGCTGCGGCCGAAGCCGCGGTGGTGGCTGCTCAGGCTGCTGCTAAAGTTGTGAGGATGGCAGGTTATGGGCGGCACACGAGAGAAGAAAGGGCAGCAACTGTCATTCAATCTTACTACAGAGGTTACCTTGCTCGACGTGCGCTTCGTGCTTTGAAAGGATTAGTGCGGCTGCAAGCGCTTGTGAGGGGACATAGTGTGAGGAAGCAAGCACAAATGACAATGAGATGCATGCAAGCATTAGTGCGAGTACAAGCAAGGGTAAAAGCTCGAAGAGTCGAATTAACTAAGGAGAAGCTTCAGAGGAAATTGGAGGAGCATGAACAAAGAGATCTCAAGATGGAAAAAGTGCCTCCTAATAAGCCAATGAGCCCTATGACAAAGTTGCACATAGATGGGTGGGACAACAGGCATCAAAGTAGCCAGAAAATTCAGAGAAATGATTTGAGGAGACATGATGCTGCAATGAAAAGGGAGAGAGCTCTTGCATATGCTTTCAATTCTCAGCAACAACATCAATATTTGAAGATAGACCCAAATGTTGATGTTATTGGAAGCTATGGAAATGAGCATGAAGCAACTGAATTGGGTTGGGAGTGGTTACAACGTTGGACAACATCACAACCACACCATGTGAGGCACTTGGGCCCCCCACATGAGATGACACTAACTACCTCAGCCACAACTACCACAGATGACATGTCTGAAGAAAAAACAGTTGAAATGGACATGGGCCTGATGGGCCAAGACTTTCTTGATTCAAGCCCATTGTCTGATAGGCACCACCAGAGACAGTCCAGTGCTGAGGTACCTAGCTACATGGCCCCAACCCAGTCGGCGAAGGCCAAGGTTCGAAATCAAGGCCCGTATAGACAACGGGCTTCACCTGGGCCTAATTGGAACTCGTCGATAAGGAGAAACTCTGTTAATGGGTTGGGCTGTGACTCATCTGGCTCTGGTGGGGCCACTGCAGCTCGCAGCTTTTCAAAAAGCCCAAGCCCACAAATCAATGGGGTTCGTATCCAATCGAGACGGATTTCGAGTGGTAGCCCGGATAATATTGGCAGTGAGGATTGGGCCTTTGGAGCTCATGGTTGGCCCTGCCATGATTAA 1356 0.4779 MGKKGSSWFSSVKKVFKSSSKDSTVPDKKDKEEKWQHEAQEVVTFEHFPVESSPDATNEGSITSTPVTEDRNHAIAFAEATAAAAEAAVVAAQAAAKVVRMAGYGRHTREERAATVIQSYYRGYLARRALRALKGLVRLQALVRGHSVRKQAQMTMRCMQALVRVQARVKARRVELTKEKLQRKLEEHEQRDLKMEKVPPNKPMSPMTKLHIDGWDNRHQSSQKIQRNDLRRHDAAMKRERALAYAFNSQQQHQYLKIDPNVDVIGSYGNEHEATELGWEWLQRWTTSQPHHVRHLGPPHEMTLTTSATTTTDDMSEEKTVEMDMGLMGQDFLDSSPLSDRHHQRQSSAEVPSYMAPTQSAKAKVRNQGPYRQRASPGPNWNSSIRRNSVNGLGCDSSGSGGATAARSFSKSPSPQINGVRIQSRRISSGSPDNIGSEDWAFGAHGWPCHD* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0678 451 ProSiteProfiles IQ motif profile. 110 138 IPR000048 GO:0005515
Lan15g0678 451 SMART iq_5 132 153 IPR000048 GO:0005515
Lan15g0678 451 SMART iq_5 109 131 IPR000048 GO:0005515
Lan15g0678 451 Coils Coil 164 198 - -
Lan15g0678 451 MobiDBLite consensus disorder prediction 20 36 - -
Lan15g0678 451 MobiDBLite consensus disorder prediction 373 435 - -
Lan15g0678 451 MobiDBLite consensus disorder prediction 348 366 - -
Lan15g0678 451 PANTHER IQ-DOMAIN 5-RELATED 1 422 - -
Lan15g0678 451 Gene3D - 110 152 - -
Lan15g0678 451 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 155 IPR027417 -
Lan15g0678 451 Pfam Protein of unknown function (DUF4005) 336 399 IPR025064 -
Lan15g0678 451 MobiDBLite consensus disorder prediction 330 451 - -
Lan15g0678 451 MobiDBLite consensus disorder prediction 1 36 - -
Lan15g0678 451 PANTHER IQ-DOMAIN 21 1 422 - -
Lan15g0678 451 MobiDBLite consensus disorder prediction 186 206 - -
Lan15g0678 451 ProSiteProfiles IQ motif profile. 134 161 IPR000048 GO:0005515
Lan15g0678 451 Pfam IQ calmodulin-binding motif 111 131 IPR000048 GO:0005515
Lan15g0678 451 MobiDBLite consensus disorder prediction 292 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0678 Lan-Chr15 15438254 15443272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0678 1 440 IQD Protein Family AT3G49260 49.688 1.47e-100 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0678 - - aprc:113873497 517.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0678 15 15438254 15443272 Lan15g0678 15 15438254 15443272 ECH
Lan15g0678 15 15438254 15443272 Lan14g0529 14 10966805 10970260 LSH
Lan15g0678 15 15438254 15443272 Lan3g0805 3 14990108 14995789 LSH