Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0610 ATGGCGGTTGCTGAGAATGTTGGAACCAAAATCGGTTCTTCAAGCCAAAATTTGGACAACAGTGTAGTATCATCCGAAACCATCACTGAGGTGGAGAAAACAAAACCCAGAAACGGTTCAATCGACGGTGGCGATGAGAATGTGAACGGTGTTTTCAACCACCATTATGGAGCTCCAAACGATAACTACAAGGTTCAAATGGGTCAGATTCCAAATGGGTTTGAAGGAAATGAGGTTCAGAATCAGCAGATGGTGGTGAATAATAATGGGTATGGTGGGGCTAATGGAGAAAACGGGGGTGAGAGTTTCAAGAGGGATATGAGGGATTTGGAGGAGCTTTTGTCAAAACTGAATCCCATGGCTGAAGAATTTGTGCCTCCATCACTGACCCAAAATCTTGGTTACTTAGCACCACCTAGTGCAGGGTTTGGTTACCCGAACAATTTTGTACTCCACAACAATTTTGGGAATGTTAATAGGCAAAATAACAGAAGGGTATGGAGGAAGAATGGCTATAACAATGGGAAGCGTAGAGCCAATAATAACATTGATATGGAGAGGGAAGAAGAGATGATTAGGAGGACTGTTTATGTGTCTGACATTGATCAACTGGTCACTGAAGAGCAGCTGGCAGCCCTCTTTCTTAACTGTGGCCAGGTTGTTGATTGTCGTGTGTGTGGGGATCCTAATTCTATTCTCCGGTTTGCCTTTGTTGAGTTTACAGATGAAGAAGGTGCAAGGACTGCTTTGAACCTGACTGGAACAATGCTAGGATATTACCCCTTGCGAGTGCTACCTTCAAAAACTGCCATTGCACCCGTTAATCCAACATTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACTAATATTGACAAGAAGCTTACTCAAGCAGATGTCGAACACTTCTTTGAATCTATTTGCGGAGAGGTTCAATGCTTGAGGCTTCTTGGAGATCACCAACATTCCACTCGAATTGCATTTGTCGAGTTTACTGTGGCCGAGAGTGCAATTGCCGCTCTGAGCTGCAGCGGTGTGATTCTGGGTTCACTGCCTATAAGGGTTAGTCCATCAAAGACACCAGTCCGGTCTCATTTCCCCCGCACTTCTATGCACTGA 1140 0.4447 MAVAENVGTKIGSSSQNLDNSVVSSETITEVEKTKPRNGSIDGGDENVNGVFNHHYGAPNDNYKVQMGQIPNGFEGNEVQNQQMVVNNNGYGGANGENGGESFKRDMRDLEELLSKLNPMAEEFVPPSLTQNLGYLAPPSAGFGYPNNFVLHNNFGNVNRQNNRRVWRKNGYNNGKRRANNNIDMEREEEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEEGARTALNLTGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVEHFFESICGEVQCLRLLGDHQHSTRIAFVEFTVAESAIAALSCSGVILGSLPIRVSPSKTPVRSHFPRTSMH* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0610 379 SUPERFAMILY RNA-binding domain, RBD 282 371 IPR035979 GO:0003676
Lan15g0610 379 MobiDBLite consensus disorder prediction 8 29 - -
Lan15g0610 379 SUPERFAMILY RNA-binding domain, RBD 177 270 IPR035979 GO:0003676
Lan15g0610 379 Gene3D - 154 271 IPR012677 -
Lan15g0610 379 Gene3D - 278 372 IPR012677 -
Lan15g0610 379 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 379 - -
Lan15g0610 379 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 259 IPR000504 GO:0003723
Lan15g0610 379 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 360 IPR000504 GO:0003723
Lan15g0610 379 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 379 - -
Lan15g0610 379 CDD RRM2_CID8_like 287 368 IPR034825 -
Lan15g0610 379 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 269 IPR000504 GO:0003723
Lan15g0610 379 CDD RRM1_CID8_like 192 271 IPR034823 -
Lan15g0610 379 SMART rrm1_1 195 265 IPR000504 GO:0003723
Lan15g0610 379 SMART rrm1_1 292 363 IPR000504 GO:0003723
Lan15g0610 379 MobiDBLite consensus disorder prediction 1 44 - -
Lan15g0610 379 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 367 IPR000504 GO:0003723
Lan15g0610 379 Pfam Ataxin-2 C-terminal region 114 128 IPR009818 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0610 Lan-Chr15 13731951 13736065 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0610 155 363 Eukaryotic Initiation Factors Gene Family AT1G34140 25.110 4.63e-08 52.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0610 15 13731951 13736065 Lan3g0783 3 14576389 14581049 LSH