Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0608 ATGGCGGTTGCTGAGAATGTTGGAACCAAAATTGATTCTTCAAGTCAAAATTTGGACAACTGTGTTGTTTCACCTGAAACCGCTGAGGTGGAGAAATCAAAACCTATAAATGGTTCCATCAACGGTGATGATCAGAATCTGAATGGTGAGTTCAACCACCATGATCTAGCTCCCAAGACTGTACCAGTTCCAAACGGTAACTACAAGGCTGAAATGGGTCAGGTGGGAAATGGGTTTGAAGGAAATGGGGTTCAGACCCAGCAGATAGTGGTGAACAATAATGGGTATGGTGGGGTTAATGGGGAGAATGGGAATGAGAGTTTCCAGAAGGATATGAGGGATTTGGAGGAAATTTTGTCAAAGTTGAACCCCATGGCTAAGGAGTTTGTGCCCCCTTCAGTAACAAACAATCTTGGTTACTTTGCTGGACCTGGTGCTGCAGGGTTTGTGTACCCTAACAATTTCTTATTCCCCAATAATTATGGGAATGTTAATGCACAAAATAATAGAAGGAGGAAGAATGGTTATAACCAGGGGAAACGAAGAGTCAATAATAAAATAGATATGGAGAGAAGAGAAGAAATGGTTAGGAGGACTGTTTATGTGTCTGACATTGATCAGCTGGTTACCGAAGAGCAGCTGGCAGCTCTCTTTCTTAACTGTGGGCAGGTTGTTGATTGCCGTGTTTGTGGGGATCCTAATTCCATTCTTCGGTTTGCTTTTGTTGAGTTTACAGATGAGGAAGGTGCAAGGGCTGCTTTGAGCCTTTCTGGAACCATGCTTGGTTATTACCCATTGAGAGTGCTGCCTTCGAAAACTGCCATTGCACCTGTTAATCCAACATATTTGCCCCGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACTAATCTTGACAAGAAGCTTACTCAAGCAGATGTCAAACAATTCTTTGAATCTATTTGTGGAGAGGTTCAACGCTTGAGGCTTCTTGGGGATTACCAGCACTTCACTCGAATTGCATTTGTCGAGTTTGCGGTGGCTGAAAGTGCAATTGCTGCTCTGAACTGTAGTGGTGTGATTCTGGGTTCAATGCCTATAAGGGTTAGTCCATCCAAGACACCAGTTCGGTCTCGCGTACCTCGTGGTCCTATGCACTGA 1152 0.4384 MAVAENVGTKIDSSSQNLDNCVVSPETAEVEKSKPINGSINGDDQNLNGEFNHHDLAPKTVPVPNGNYKAEMGQVGNGFEGNGVQTQQIVVNNNGYGGVNGENGNESFQKDMRDLEEILSKLNPMAKEFVPPSVTNNLGYFAGPGAAGFVYPNNFLFPNNYGNVNAQNNRRRKNGYNQGKRRVNNKIDMERREEMVRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEEGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTYLPRSEDEREMCSRTIYCTNLDKKLTQADVKQFFESICGEVQRLRLLGDYQHFTRIAFVEFAVAESAIAALNCSGVILGSMPIRVSPSKTPVRSRVPRGPMH* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0608 383 SUPERFAMILY RNA-binding domain, RBD 168 275 IPR035979 GO:0003676
Lan15g0608 383 CDD RRM2_CID8_like 291 372 IPR034825 -
Lan15g0608 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 371 IPR000504 GO:0003723
Lan15g0608 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 273 IPR000504 GO:0003723
Lan15g0608 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 263 IPR000504 GO:0003723
Lan15g0608 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 364 IPR000504 GO:0003723
Lan15g0608 383 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 383 - -
Lan15g0608 383 SMART rrm1_1 199 269 IPR000504 GO:0003723
Lan15g0608 383 SMART rrm1_1 296 367 IPR000504 GO:0003723
Lan15g0608 383 CDD RRM1_CID8_like 196 275 IPR034823 -
Lan15g0608 383 SUPERFAMILY RNA-binding domain, RBD 285 377 IPR035979 GO:0003676
Lan15g0608 383 Pfam Ataxin-2 C-terminal region 119 133 IPR009818 -
Lan15g0608 383 Gene3D - 159 275 IPR012677 -
Lan15g0608 383 Gene3D - 280 376 IPR012677 -
Lan15g0608 383 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0608 Lan-Chr15 13697301 13700939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0608 197 366 Eukaryotic Initiation Factors Gene Family AT1G34140 24.713 1.08e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0608 - - aip:107622933 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0608 15 13697301 13700939 Lan15g0608 15 13697301 13700939 ECH
Lan15g0608 15 13697301 13700939 Lan3g0782 3 14573559 14576563 LSH