Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0606 ATGAGTGGTCGCTTTTCTCGCACAATTTATGTTGGCAACCTACCTTCAGATATCCGAGAATCAGAAATTGAAGATATCTTCTACAAGTATGGCCACATAGTGGATATTGAGTTGAAGGTTCCACCTCGCCCACCTTCTTTCTGCTTTGTTGAGTTTGACAATGCTCGAGATGCAGAAGATGCAATCCGAGGTCGAGATGGATACAACTTTGATGGTTGTCGATTAAGGGTGGAGCTTGCCCATGGTGGTAGAGGGCAATCATCAAATGATCGCCGTGGCTATGGAAGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTAGTGGCAGCGGTGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGTTATTGTGCGTGGACTCCCATCTTCTGCATCCTGGCAGGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTTTGTTTTGCTGAGGTTACCCGTGATAGTGAAGGGACTTTTGGCCTTGTTGATTACACTAATTATGACGACATGAAATATGCAATTCGGAAGCTGGATGACACTGAGTTCAAAAATCCTTGGGCAAGATCTTATATTCGGGTGAGGAAGTTTGAGAGTAGTCGCTCAAGGAGCCGCAGCAGAAGCCCCAGCAGGAGCAGAAGTCCTAAAAGGAATAGAAGTAGATCTTTGGAGCGATCTGTGTCTAGGTCACGATCTAGGTCTAGATCTAGGTCAGCATCACCAACCAAGCCTTCCAGGCCAAGATCACGATCAAGATCTGAGTCTCCACGCCAGGTGCTGTCGGGTAGTGGTTGA 801 0.4782 MSGRFSRTIYVGNLPSDIRESEIEDIFYKYGHIVDIELKVPPRPPSFCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGQSSNDRRGYGSGGGGGGGGGGGSGSGGGRFGISRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSEGTFGLVDYTNYDDMKYAIRKLDDTEFKNPWARSYIRVRKFESSRSRSRSRSPSRSRSPKRNRSRSLERSVSRSRSRSRSRSASPTKPSRPRSRSRSESPRQVLSGSG* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0606 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 187 IPR000504 GO:0003723
Lan15g0606 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Lan15g0606 266 SUPERFAMILY RNA-binding domain, RBD 6 189 IPR035979 GO:0003676
Lan15g0606 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 201 IPR000504 GO:0003723
Lan15g0606 266 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 263 - -
Lan15g0606 266 CDD RRM1_SF2_plant_like 8 79 - -
Lan15g0606 266 MobiDBLite consensus disorder prediction 219 233 - -
Lan15g0606 266 SMART rrm1_1 124 197 IPR000504 GO:0003723
Lan15g0606 266 SMART rrm1_1 8 78 IPR000504 GO:0003723
Lan15g0606 266 Gene3D - 123 199 IPR012677 -
Lan15g0606 266 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR34A 2 263 - -
Lan15g0606 266 MobiDBLite consensus disorder prediction 200 266 - -
Lan15g0606 266 CDD RRM2_SF2_plant_like 123 198 - -
Lan15g0606 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Lan15g0606 266 Gene3D - 2 122 IPR012677 -
Lan15g0606 266 MobiDBLite consensus disorder prediction 81 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0606 Lan-Chr15 13668687 13673867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0606 8 207 Eukaryotic Initiation Factors Gene Family AT4G34110 22.596 1.32e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0606 K12890 - gmx:100800653 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0606 15 13668687 13673867 Lan15g0606 15 13668687 13673867 ECH
Lan15g0606 15 13668687 13673867 Lan3g0781 3 14543592 14549911 LSH