Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0597 ATGGGTGATTTAGTGATGAGTGGAGAGAAGTTGAAGTTAGTGGGAGTGGAGGAAGAGAAGATAAAGGAATTGAAGGGGTTGATGAGGTGGGAGAAGTTCTTACCAAAGATGGTGTTAAGGGTTCTGTTGGTTGAAGCTGATGATTCTACTAGGCAGATTATAGCAGCTCTTCTCAGAAAATGCAACTATAAAGTGGCTGCTGTTCCAGATGGCTTGAAGGCATGGGAAATACTCAAGGGAAGGCCACACAGTATTGATCTAATACTCACAGAAGTGGACCTTCCATCCATATCTGGCTATGCTCTTCTCACGTTAATAATGGAGCATGATATTTGCAAAAATATCCCTGTCATAATGATGTCATCACAAGATTCAGTTAGCACGGTATACAAATGCATGTTGAGAGGTGCTGCTGACTATCTTGTTAAGCCCCTTAGAAAAAACGAACTAAGGAATTTGTGGCAACATGTTTGGAGAAGACAACAGTCAACCATTGGCATGAGTAGCCCTCAAGAAGAGAGTACTGCACAGCAGAAAGTTGAAGCCACTGCTGAAAACAATGCTACTAGTAATCGTTCAACTGGTTCTGCTGCTTGCAGCCAGAGAAATAAGGAAATGATGGAGAAAGGAAGTGATGCACATAGCTCTTGTACAAAGCCGGACTTGGAAGCTGAGAGTGACCCTGTCGAAACCATGAGGGAATATTCTCCACTGACATGTGGTGAAGCATATCCAAATGGTACAAATACACAAGAGGTTGAAACGTGCATTCGTTTAGGCCAGACATTGATCAAGCATGATAGTCATGATGGAGGATTAACCATGGATATCTCCAAAAATGGTGAGGCAAGCACAACTAGTGGAAAGGATGGTGATCACGAGCATTTTAGGGGTGCTGACGTTAGTGGTGAGGCTCATGACAATGACTATGCTCAAATTAGCTCTTTTAAGGAAGCTATTGACTTGATTGGAGCATTTCAAACTCGTCCAAACTGCAGTGTCAAAAATTCGGCAGTTGATTGCACGGGTAAATTTGACTTTTCTCCGCAGTTGGATCTTTCTCTAAGAAGATCTCAACCCAGTAACTTTGAGAATGAACTCTCTGAAGAAAGACACACCCTCGTGCATTCTAATGCCTCGGCTTTCAAGCGGTATACTAACAGGCCGCTATTGCAAGCCGCACCTGCAATGTTGGTTAACTTCTCTGATCAACAAAGAGAACAAAGAACAAATTGTGAGAAAAGTATGCCCCATATCACTACTGGCTGCAACTCGGATAGTTCCACATCTAGTACGCAAAGATGTATTATGTCTCCAGCTACAACCCAATCAAAAGAATCTGAATTCGCAACTTCACATTCCCAGCAAGCACATTCTCTCCCAATTCCAGTAAAAGGTGTAAGGTTCAATGATATATGTGCAGCCTATGGTTCTGTACTTCCTCCGATGTTTTGTACTCAATCAGGTCCACAATCAATGTCAAGTCCTAGTTCAGTTGTGTTCCTTGAACCAACCTTTCAAGTAAATGCATTTTATCCGTCAAACATTAGAGAAAACAGTTCTGAGAAGCTTTATGAACCTCATGGCCCTAATGGAGACAGCGCCCCAAAACACATGGTGTACACACAGGGACACAGATCAGAATATGCAGAGGATCGAGAATGTATCTCTCCTGCAAATAATCTAAGTGTATCGAGTAGTTTCTGTAATGAAAATGCAAGCCATATAAATCACACCGGTTATCGAAGCAATTGTGGAATTAGCAGCAAATTTGATCAAGTTGCCACTGTGAGGTCAGCTTCAGAGGGCAAGAATGAAGACCTCACAAACAATGGAAGTTCTCATCGACCTACCCTGAGAGAAGCAGCTCTAAACAAGTTTCGCTTGAAGCGGAAGGAGAGATGCTATGAGAAGAAGGTTCGATATGAGAGCAGAAAGAAACTAGCAGAGCAGCGACCGAGAGTGAAAGGACAATTTGTTCGTCAAGCGCAACCTGATCCTCTTTCTATAGAAAAAGTTGGTAACGAATATCAATAG 2037 0.4246 MGDLVMSGEKLKLVGVEEEKIKELKGLMRWEKFLPKMVLRVLLVEADDSTRQIIAALLRKCNYKVAAVPDGLKAWEILKGRPHSIDLILTEVDLPSISGYALLTLIMEHDICKNIPVIMMSSQDSVSTVYKCMLRGAADYLVKPLRKNELRNLWQHVWRRQQSTIGMSSPQEESTAQQKVEATAENNATSNRSTGSAACSQRNKEMMEKGSDAHSSCTKPDLEAESDPVETMREYSPLTCGEAYPNGTNTQEVETCIRLGQTLIKHDSHDGGLTMDISKNGEASTTSGKDGDHEHFRGADVSGEAHDNDYAQISSFKEAIDLIGAFQTRPNCSVKNSAVDCTGKFDFSPQLDLSLRRSQPSNFENELSEERHTLVHSNASAFKRYTNRPLLQAAPAMLVNFSDQQREQRTNCEKSMPHITTGCNSDSSTSSTQRCIMSPATTQSKESEFATSHSQQAHSLPIPVKGVRFNDICAAYGSVLPPMFCTQSGPQSMSSPSSVVFLEPTFQVNAFYPSNIRENSSEKLYEPHGPNGDSAPKHMVYTQGHRSEYAEDRECISPANNLSVSSSFCNENASHINHTGYRSNCGISSKFDQVATVRSASEGKNEDLTNNGSSHRPTLREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQAQPDPLSIEKVGNEYQ* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0597 678 MobiDBLite consensus disorder prediction 165 201 - -
Lan15g0597 678 ProSiteProfiles CCT domain profile. 620 662 IPR010402 GO:0005515
Lan15g0597 678 MobiDBLite consensus disorder prediction 414 457 - -
Lan15g0597 678 MobiDBLite consensus disorder prediction 411 457 - -
Lan15g0597 678 PANTHER TWO-COMPONENT RESPONSE REGULATOR 25 652 IPR045279 GO:0009736
Lan15g0597 678 CDD psREC_PRR 41 144 - -
Lan15g0597 678 MobiDBLite consensus disorder prediction 165 234 - -
Lan15g0597 678 Gene3D - 37 234 - -
Lan15g0597 678 MobiDBLite consensus disorder prediction 646 678 - -
Lan15g0597 678 MobiDBLite consensus disorder prediction 205 230 - -
Lan15g0597 678 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 25 652 - -
Lan15g0597 678 SUPERFAMILY CheY-like 39 165 IPR011006 -
Lan15g0597 678 Pfam Response regulator receiver domain 41 152 IPR001789 GO:0000160
Lan15g0597 678 SMART REC_2 39 154 IPR001789 GO:0000160
Lan15g0597 678 Pfam CCT motif 620 662 IPR010402 GO:0005515
Lan15g0597 678 ProSiteProfiles Response regulatory domain profile. 40 158 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0597 Lan-Chr15 13462763 13467274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0597 24 664 Response Regulator Gene Family AT5G24470 40.524 4.99e-128 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lan15g0597 Response_reg 4e-21 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0597 15 13462763 13467274 Lan15g0597 15 13462763 13467274 ECH