Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0588 ATGAACATGGCATCGAATAGTCCATTATTTGACGATATACGCATCCATTCTGATATTGATCCCCCTCAAATTGAAGAGTTGACAGATGTTAGTGAATTAGTGAATGATCCTACACAAACTGCTCATAAACCTAATGGGATTGTTTCAAGCAGTGTTCGTGAGCTCTTAGAGTGCCCTGTATGCTTGAATGCCATGTACCCTCCAATCCACCAGTGTTCAAATGGTCACACTATATGCTCCAGTTGCAAACCCAGGGTCCATAATCGGTGCCCGACTTGTAGGCATGAGCTTGGCAATATCAGATGTCTGGCACTGGAGAAGGTGGCTGCATCTTTGGAACTTCCGTGTAAATATCAAGGTTTTGGATGCATTGGTATATATCCATATTATAGCAAGCTAAAACATGAATCTCAATGTGTGTATAGACCCTATAACTGTCCATATGCTGGTTCAGAATGCTCTGTTATGGGTGATATACCCTACCTGGCGTCCCATCTGAAAGAAGACCACAAAGTGGACATGCACAGTGGTAGTACTTTTAACCACCGCTATGTCAAATCAAATCCACAAGAAGTTGAAAATGCCACATGGATGCTGACGGTTTTCAGCTGCTATGGTCAGTATTTTTGTCTACATTTCGAAGCTTTTCAGTTAGGTGCAGCTCCTGTCTACATAGCCTTTTTGCGGTTTATGGGCGATGACAATGAGGCAAAGAATTATAGCTACAGTCTAGAGGTGGGTGGAAATGGGCGGAAAATGGTTTGGCAGGGGGTTCCGAGAAGCATTAGGGACAGCCACTGCAAGGTTCGCGACAGTTATGACGGTCTCATCATTCAAAGGAATATGGCTCTTTTCTTTTCAGGTGGTGACCAGAAGGAGTTAAAGTTAAGAATTACTGGCAGGATTTGGAAAGAGTAG 918 0.4336 MNMASNSPLFDDIRIHSDIDPPQIEELTDVSELVNDPTQTAHKPNGIVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSSCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCIGIYPYYSKLKHESQCVYRPYNCPYAGSECSVMGDIPYLASHLKEDHKVDMHSGSTFNHRYVKSNPQEVENATWMLTVFSCYGQYFCLHFEAFQLGAAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHCKVRDSYDGLIIQRNMALFFSGGDQKELKLRITGRIWKE* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0588 305 CDD RING-HC_SIAHs 56 94 - -
Lan15g0588 305 ProSiteProfiles Zinc finger RING-type profile. 58 94 IPR001841 -
Lan15g0588 305 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 17 305 - -
Lan15g0588 305 SUPERFAMILY TRAF domain-like 111 303 - -
Lan15g0588 305 SUPERFAMILY RING/U-box 50 98 - -
Lan15g0588 305 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 167 299 IPR008974 GO:0005515
Lan15g0588 305 Pfam Seven in absentia protein family 100 299 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lan15g0588 305 CDD Sina 172 300 - -
Lan15g0588 305 Coils Coil 300 305 - -
Lan15g0588 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 110 IPR013083 -
Lan15g0588 305 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 17 305 - -
Lan15g0588 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 166 IPR013083 -
Lan15g0588 305 ProSiteProfiles Zinc finger SIAH-type profile. 111 171 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0588 Lan-Chr15 13303229 13313992 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0588 32 305 C3H Transcription Factor Family AT2G41980 74.275 1.29e-156 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0588 K04506 - gmx:100793457 591.267