Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0586 ATGTCTCCAGGCCCCGTCGTTGACGCACCCTCCGAGGTCCAACCCGAACAGCAACTTCCCTCCGTCGATGAAGTCACAATCCAGAAGAAGAGTCCTCAGCCCCAGGAGGAAGATGCTCCTGTTGTGGAGGATGTGAAAGATGATGACGGTGATGACGATGAGGATGATGATGAAGATGACGATGATGACAAGGATGACGGTGCTCAAGGTTCGGGTGAGGGTTCAAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAGCAATGTTGAAGCTTGGGCTAAAACCTGTTACTGGTGTTAGCAGAGTCACAATCAAGAGAACAAAAAATGTCTTATTTTTCATCTCTAAACCTGATGTCTTCAAGAGTCCACATTCTGAGACCTATGTCATATTCGGGGAGGCAAAAATAGAAGACTTGAGCTCTCAGTTGCAGTCACAAGCAGCTCAGCAATTCAGAATGCCCGATGTGGGATCCATAACAGCAAAACCAGATGAAGGTGCTGCAGCTGAAGGACCTCAACCTGATGATGAAGAAGAGGAGGTTGATGAAACTGGTGTGGCTCCCCACGACATTGATCTGGTCATGACACAGGCGGGAGTGGCACGAAACAAGGCTGTCAAGGCTCTGAAGAATCACGATGGTGACATTGTTAGCGCCATCATGGAGCTCACCACTTAA 678 0.4867 MSPGPVVDAPSEVQPEQQLPSVDEVTIQKKSPQPQEEDAPVVEDVKDDDGDDDEDDDEDDDDDKDDGAQGSGEGSKQSRSEKKSRKAMLKLGLKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYVIFGEAKIEDLSSQLQSQAAQQFRMPDVGSITAKPDEGAAAEGPQPDDEEEEVDETGVAPHDIDLVMTQAGVARNKAVKALKNHDGDIVSAIMELTT* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0586 225 Pfam HYPK UBA domain 185 224 IPR044034 -
Lan15g0586 225 PANTHER NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2 21 224 - -
Lan15g0586 225 PANTHER NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED 21 224 IPR016641 GO:0005854
Lan15g0586 225 MobiDBLite consensus disorder prediction 1 89 - -
Lan15g0586 225 MobiDBLite consensus disorder prediction 170 185 - -
Lan15g0586 225 MobiDBLite consensus disorder prediction 158 188 - -
Lan15g0586 225 Pfam NAC domain 81 136 IPR002715 -
Lan15g0586 225 Gene3D - 87 140 IPR038187 -
Lan15g0586 225 Gene3D - 186 223 - -
Lan15g0586 225 SMART NAC_2 81 137 IPR002715 -
Lan15g0586 225 MobiDBLite consensus disorder prediction 41 67 - -
Lan15g0586 225 ProSiteProfiles NAC A/B domain profile. 78 143 IPR002715 -
Lan15g0586 225 MobiDBLite consensus disorder prediction 14 33 - -
Lan15g0586 225 CDD UBA_NAC_euk 188 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0586 Lan-Chr15 13261006 13263049 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0586 K03626 - gmx:100780632 288.885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0586 15 13261006 13263049 Lan14g0672 14 13665223 13666237 LSH
Lan15g0586 15 13261006 13263049 Lan3g0776 3 14455505 14462150 LSH
Lan9g1124 9 18615406 18616685 Lan15g0586 15 13261006 13263049 PCT
Lan15g0586 15 13261006 13263049 Lan9g1124 9 18615406 18616685 PCT