Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0583 ATGGCTGTTTTGTCTCTGAATTCGTTGCCTTTAGGGTTTCGATTCCGACCCAGTGATGAAGAACTCATTGATTACTATCTCAGACAGAAGATCAATGGTAATGGTCAAGAGGTTTGGGTTATTCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGATTTGCCTGATTTGTCAGTGATAAGGAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCACAGGACCGTAAGTACCCAAATGGGCATCGGTTGAACCGAGCAACCAATCATGGGTATTGGAAGGCAACAGGCAAGGATCGCAAAATCAAGTCTGGCTCTCTCTTGATTGGAATGAAGAAGACTTTAGTCTTCTACACTGGTCGTGCCCCTAAGGGGAAAAGGACCCATTGGGTTATGCATGAGTACCGTCCTACCCTCAAGGAGCTTGATGGTACCAATCCTGGACAGAATGCATATGTCCTCTGTCGATTATTTAAGAAACAGGATGAGAGTCTCGAAATTGCAAACTGTAATGAAGTGGGGCAGACTACTTCAGCTCCCAAGGTGGCCAATTCCTCTCCAGAAGGGATGCAATTGGCTCCAGCTGTGGCTTCAGGATCCCTATCACAAATTACAGATGATAAACATCAAGCAGTTGTTCCCGAGAGCTCTGAGGGAACAATATCCAATGTTAGAAACTCTGGTGATTCCCATAATGGCGGATATGAAGCTTATGATAGACAAATTCAAACTCCGGAACTTGCCGCAAAGGAGGAACAGCGGCTGAACATTGATGTAATTTTCGACCCCAAAACCGAGCTATTAGATGTCGAATTATTCCCTCCAGCACATGCACATATTCCAACAGATTTTTATTGTCAACCCGACAGTGAATTAGATGGTCTTTGTGGGCTTCAATATGGTGCAAATGAGACAAATATTTCAGACTTCTTTGATTCAGTTGTTAATTGGGATGAAGTGTCCTATGAGAACTCCAGCAGTGATAAGCAGAAGAGCAATGTTGGGTTATTTCAAAATGATTGGCAGATGACTTCCCCACCTGATATTAGTACGGGCCAAGTTTTCAATGCAGCCAGTGATTATGAGCAACCAATAAACATTAATAATACGGTTCCTAGTAGTGATACTGGAATCAGGATAAGGACCCGACAGGTAGAAAATGAACAGCCAAACAAGTACATGGGCCAAGTCTACAATGCACCAAACGATTATGAGCAACCAATAAACTATAATAATAATGATAATAATAATAACAAACATAATAATATGGTTGCTAGTGCTGATACTGGAATCAAGAGAAGGACTCGACCGGTACAAAATGAACCAAATCGAAACTTTGCAGGGCAAGGTACTGCACAAAGGAGAATCCGTTTGGCTAGGAATGTTGCAGTTCCCTCAAGTTGTGCAGGAGAAGGGCATAATTTAAAACCAGTCACTGAAGGGGAGATGAAAGCTTCAGAAAATCATGCTGCTGATGAGAGTTCTACAGCTACTAGCAATGGGAAACAATCCAGGAAAACATCTAAGTCAACTGACAGTACAAAAATTTCGGTCCCTGGGTTAAAAGACATCTTATTGCTGAGAAGGGTCCCTTTCATATCAAAGGCCTCCTCCAATCTTACTATGTGGTCTTCTGTTATCGTAGTTTCTTTCATTGCAGTGATCTCATTAGTGCTCTTTGTTAACATATGGGGAAATGTATAA 1701 0.4215 MAVLSLNSLPLGFRFRPSDEELIDYYLRQKINGNGQEVWVIREIDVCKWEPWDLPDLSVIRNKDPEWFFFCPQDRKYPNGHRLNRATNHGYWKATGKDRKIKSGSLLIGMKKTLVFYTGRAPKGKRTHWVMHEYRPTLKELDGTNPGQNAYVLCRLFKKQDESLEIANCNEVGQTTSAPKVANSSPEGMQLAPAVASGSLSQITDDKHQAVVPESSEGTISNVRNSGDSHNGGYEAYDRQIQTPELAAKEEQRLNIDVIFDPKTELLDVELFPPAHAHIPTDFYCQPDSELDGLCGLQYGANETNISDFFDSVVNWDEVSYENSSSDKQKSNVGLFQNDWQMTSPPDISTGQVFNAASDYEQPININNTVPSSDTGIRIRTRQVENEQPNKYMGQVYNAPNDYEQPINYNNNDNNNNKHNNMVASADTGIKRRTRPVQNEPNRNFAGQGTAQRRIRLARNVAVPSSCAGEGHNLKPVTEGEMKASENHAADESSTATSNGKQSRKTSKSTDSTKISVPGLKDILLLRRVPFISKASSNLTMWSSVIVVSFIAVISLVLFVNIWGNV* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0583 566 SUPERFAMILY NAC domain 4 159 IPR036093 GO:0003677|GO:0006355
Lan15g0583 566 MobiDBLite consensus disorder prediction 213 229 - -
Lan15g0583 566 Gene3D NAC domain 18 163 IPR036093 GO:0003677|GO:0006355
Lan15g0583 566 MobiDBLite consensus disorder prediction 482 513 - -
Lan15g0583 566 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 2 440 - -
Lan15g0583 566 MobiDBLite consensus disorder prediction 489 513 - -
Lan15g0583 566 MobiDBLite consensus disorder prediction 433 452 - -
Lan15g0583 566 ProSiteProfiles NAC domain profile. 9 159 IPR003441 GO:0003677|GO:0006355
Lan15g0583 566 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 2 440 - -
Lan15g0583 566 Pfam No apical meristem (NAM) protein 10 135 IPR003441 GO:0003677|GO:0006355
Lan15g0583 566 MobiDBLite consensus disorder prediction 213 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0583 Lan-Chr15 13217545 13221215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0583 1 490 NAC Transcription Factor Family AT4G35580 39.526 1.52e-90 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lan15g0583 NAM 2.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0583 - - lang:109338230 775.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0583 15 13217545 13221215 Lan15g0583 15 13217545 13221215 ECH
Lan15g0583 15 13217545 13221215 Lan3g0774 3 14430821 14436813 LSH
Lan11g0409 11 2994186 2997950 Lan15g0583 15 13217545 13221215 PCT
Lan9g1168 9 19107534 19110788 Lan15g0583 15 13217545 13221215 PCT
Lan15g0583 15 13217545 13221215 Lan11g0409 11 2994186 2997950 PCT
Lan15g0583 15 13217545 13221215 Lan9g1168 9 19107534 19110788 PCT