Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0561 ATGGAGAAGGAGTTATTGGAATTGTATGAATCGGCCAAGAAGGCAGCTGATGCGGCGGTCTCCGGCGACGGAGAATCTGATGAAAGTAGATGTATTGATGCGCTTGAACAGCTCAAGAAATTTCCTGTTAATTACAAGATTCTCGTCAGCACCCAGGTGGGTAAACATCTTAAATCCCTGACGAAGCATCCAAGGCAGAAAATTCGTGCCTTTGCTATTGACCTAATTGAGATATGGAAAAACATAATAATTAAAGAAACAAGCAAAAATAAGAATGGGGGCTCTGATAATAAGGTTGAGCCAGCTAATGGGGAGAGCGCTAAAGCTGGAAAATTTCAAAGGAGTCTTTCTGTGAAGGTTGAAAAGGCTGAAACTGTCAAGGTTGAGAAAATTGATAGGAATGGTACACCAAGGTCAAGCTCAGACAGTACAAAGAGAACACAAAATATGGATGTCAAAATTGAAAAAACTGATCGTGCTGCAAATGTTAAGGTGGAGAAGCAAGTTTCTGCGGTGAAGAGAACATCATCCAGCTCTGCTGCTCCTCCGAAGCTTAAGACTATGATTAAATCTAATGATTCGGTTCGAGACAAAATTAGAGAACTTCTCCAAGAGGCTTTATCCAAGGTTCCTGGAGAGGCTGATGAAGATGTCATGGATGAAGTTAATGCTTCTGACCCTATTCGTGTTGCTGTGACAGTGGAGTCTCTACTATTTGAGAAGTGGGGTCCTTCTAATGGTGCTCAAAAGGTCAAGTATAGGTCCTTAATGTTTAACCTTAAGGATCAAAATAACCCAGATTTCCGGAGAAAAGTTCTACTTGGTGTTATCGCGCCAGAGCGACTAATCGACATGAGCACATCAGAAATGGCTAGTGAGCGAAGGAAACAAGAAATTCAGAAACTTGAAGAGAAAGCTTTGTTTGAATGTGAGCGTGGAGCTCAACCAAAAGCCACAACCGATCAATTTAAGTGTGGTCGATGTGGTCAAAGGAAAACCACCTATTACCAAATGCAAACTCGCAGTGCTGATGAGCCTATGACAACCTATGTCACTTGTGTTGTCTGCAATAACCGTTGGAAGTTCTGTTAG 1092 0.4194 MEKELLELYESAKKAADAAVSGDGESDESRCIDALEQLKKFPVNYKILVSTQVGKHLKSLTKHPRQKIRAFAIDLIEIWKNIIIKETSKNKNGGSDNKVEPANGESAKAGKFQRSLSVKVEKAETVKVEKIDRNGTPRSSSDSTKRTQNMDVKIEKTDRAANVKVEKQVSAVKRTSSSSAAPPKLKTMIKSNDSVRDKIRELLQEALSKVPGEADEDVMDEVNASDPIRVAVTVESLLFEKWGPSNGAQKVKYRSLMFNLKDQNNPDFRRKVLLGVIAPERLIDMSTSEMASERRKQEIQKLEEKALFECERGAQPKATTDQFKCGRCGQRKTTYYQMQTRSADEPMTTYVTCVVCNNRWKFC* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0561 363 ProSitePatterns Zinc finger TFIIS-type signature. 325 360 IPR001222 GO:0003676|GO:0006351|GO:0008270
Lan15g0561 363 Pfam Transcription factor S-II (TFIIS), central domain 192 309 IPR003618 GO:0006351
Lan15g0561 363 SMART Cys4_2 323 362 IPR001222 GO:0003676|GO:0006351|GO:0008270
Lan15g0561 363 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 363 - -
Lan15g0561 363 MobiDBLite consensus disorder prediction 89 111 - -
Lan15g0561 363 SUPERFAMILY Elongation factor TFIIS domain 2 180 293 IPR036575 GO:0006351
Lan15g0561 363 ProSiteProfiles Zinc finger TFIIS-type profile. 321 361 IPR001222 GO:0003676|GO:0006351|GO:0008270
Lan15g0561 363 ProSiteProfiles TFIIS N-terminal domain profile. 1 86 IPR017923 -
Lan15g0561 363 SMART mid_6 193 301 IPR003618 GO:0006351
Lan15g0561 363 SMART TFS2_5 8 85 IPR003617 GO:0005634
Lan15g0561 363 PANTHER TRANSCRIPTION ELONGATION FACTOR TFIIS 1 363 - -
Lan15g0561 363 Gene3D - 140 291 IPR036575 GO:0006351
Lan15g0561 363 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 24 98 IPR035441 -
Lan15g0561 363 CDD Zn-ribbon_TFIIS 316 362 - -
Lan15g0561 363 PIRSF TFIIS 2 363 IPR035100 -
Lan15g0561 363 Coils Coil 185 205 - -
Lan15g0561 363 CDD TFIIS_I 9 83 - -
Lan15g0561 363 Gene3D - 292 363 - -
Lan15g0561 363 TIGRFAM TFSII: transcription elongation factor S-II 11 363 IPR006289 GO:0003676|GO:0005634|GO:0006368
Lan15g0561 363 Pfam TFIIS helical bundle-like domain 34 83 IPR017923 -
Lan15g0561 363 SUPERFAMILY Zinc beta-ribbon 302 361 - -
Lan15g0561 363 Pfam Transcription factor S-II (TFIIS) 323 361 IPR001222 GO:0003676|GO:0006351|GO:0008270
Lan15g0561 363 Coils Coil 285 305 - -
Lan15g0561 363 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 97 IPR035441 -
Lan15g0561 363 ProSiteProfiles TFIIS central domain profile. 195 318 IPR003618 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0561 Lan-Chr15 12925012 12928033 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lan15g0561 TFIIS_M 4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0561 K03145 - gmx:100811982 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0561 15 12925012 12928033 Lan3g0760 3 14183862 14186739 LSH