Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0558 ATGGCTTCTTCTTCTACTTGGTCATCTTCTAATTGGGTCATGGAAAGTGGTGATGTTCCTCATGTTTTGGCAGTTGATGACAACCTTATTGATCGTAAACTTGTTGAAAAGCTGCTTAGGAACTCTTCTTGCAAAGTTACAACTGCAGAAAATGGGCCTAGGGCATTGGAGTTCTTGGGCTTGACAAGTGGGGAACAGAACCCCTTGAATGGGAGATCCAAAGTGAATTTGATTATCACAGACTATTGCATGCCAGGAATGACAGGCTATGAGCTACTTAAGAAAATTAAGGAATCATCTGAGATGAAGGAGATTCCAGTGGTTATAATGTCATCTGAGAACATTCCAACAAGGATTAACAAGTGTATGGAAGAAGGGGCTCAAATGTTCATGTTGAAGCCTCTAAAACAATCTGATGTGAAAAAACTAACATGTCAACTTATGAATAGGGATTGTGAAATTTAG 465 0.3935 MASSSTWSSSNWVMESGDVPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALEFLGLTSGEQNPLNGRSKVNLIITDYCMPGMTGYELLKKIKESSEMKEIPVVIMSSENIPTRINKCMEEGAQMFMLKPLKQSDVKKLTCQLMNRDCEI* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0558 154 Pfam Response regulator receiver domain 22 142 IPR001789 GO:0000160
Lan15g0558 154 SMART REC_2 20 144 IPR001789 GO:0000160
Lan15g0558 154 SUPERFAMILY CheY-like 20 149 IPR011006 -
Lan15g0558 154 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 150 IPR045279 GO:0009736
Lan15g0558 154 CDD REC_typeA_ARR 22 143 - -
Lan15g0558 154 Gene3D - 18 152 - -
Lan15g0558 154 ProSiteProfiles Response regulatory domain profile. 21 148 IPR001789 GO:0000160
Lan15g0558 154 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR17-LIKE 9 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0558 Lan-Chr15 12863003 12864962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0558 21 149 Response Regulator Gene Family AT3G56380 74.809 3.42e-65 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lan15g0558 Response_reg 2.7e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0558 K14492 - gmx:100499827 259.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0558 15 12863003 12864962 Lan3g0758 3 14165037 14167165 LSH
Lan2g0950 2 20464768 20465864 Lan15g0558 15 12863003 12864962 PCT
Lan11g0440 11 3236695 3237892 Lan15g0558 15 12863003 12864962 PCT
Lan9g1137 9 18739229 18740228 Lan15g0558 15 12863003 12864962 PCT