Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0553 ATGGCTCTTAAACATCCACCACACCGCCTATTGCTTGACACAGATTCAAGCTCAACTGCACCAGGGAATGCAAATAAGACAAGTGAGTCTTTTGCAAGTAACACAAAATTTGACACCAATATGGTGATTATCTTGGCAGCCCTGCTTTGTGCACTTATATGTGCTCTTGGACTCAACTCAATTGTACGTTGCGCTCTGCGATGTATCCGAAGGTTCGCAGTTGGGACATCGGATGAGGTTTCGGCTCGTGCGACATCGAAAGGACTAAAGAAGAAAGCATTGCATCAGATTCCTATAGCTGTTTATGGTGCAGGTAGTGCAAGTATTGCAGCCACAGAATGTCCAATTTGCCTTGGGGAGTTTATGAATGGAGAGAAAGTTAGAGTGTTACCAAAATGTCACCATGGATTTCATGTTAGATGCATAGATAAATGGCTGCTCTCACATTCCTCTTGCCCTACTTGTAGACAGTCTTTGCTTGAACATCCAACAATTTCTGATGCTGCAACTGTTGCTATTGCTGTAACTGCAGCTGTAGGAACTAGCCATCATGTGGAGCATGTCTTAGAAGATCATGAACATGAGCCTGTAGATGTAGCTGTGGATGAGATTGGTTAA 618 0.4353 MALKHPPHRLLLDTDSSSTAPGNANKTSESFASNTKFDTNMVIILAALLCALICALGLNSIVRCALRCIRRFAVGTSDEVSARATSKGLKKKALHQIPIAVYGAGSASIAATECPICLGEFMNGEKVRVLPKCHHGFHVRCIDKWLLSHSSCPTCRQSLLEHPTISDAATVAIAVTAAVGTSHHVEHVLEDHEHEPVDVAVDEIG* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0553 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 164 IPR013083 -
Lan15g0553 205 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 8 175 - -
Lan15g0553 205 SUPERFAMILY RING/U-box 113 163 - -
Lan15g0553 205 SMART ring_2 114 155 IPR001841 -
Lan15g0553 205 MobiDBLite consensus disorder prediction 12 29 - -
Lan15g0553 205 PANTHER RING-H2 FINGER PROTEIN ATL74 8 175 - -
Lan15g0553 205 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Lan15g0553 205 CDD RING-H2_PA-TM-RING 113 156 - -
Lan15g0553 205 MobiDBLite consensus disorder prediction 1 29 - -
Lan15g0553 205 Pfam Ring finger domain 113 156 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0553 Lan-Chr15 12754185 12755926 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0553 9 164 C3H Transcription Factor Family AT3G10910 60.479 8.64e-64 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0553 - K19040 gmx:100787273 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0553 15 12754185 12755926 Lan14g0491 14 10495047 10496716 LSH