Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0539 ATGTATCCTTCTACTTCCTTTACTTCACACCCTCTTCTTGAAAACTTCAACTCAAGAAGGTTACTCCAAACCTCACTTAAACCACTCAACTCAGTTAACCCCCCAACTTCCACAAATATCCACAACTCAACAGAATCTAGTAACTTTGATGCAAATGTTGTTATGGTACTCTCAGTCTTATTATGTGCTCTAATTTGCTCACTTGGTTTAAACACAATCATAAGATGTGCATTAAAGTGTTCAAATTTAGTTGCCAATGACTTATCAACCACCAATACTTACACTCCAACTGTGGTAGCAAACACAGGAATAAAGAAGAAAGCACTCAAGACTTTCACTACAGTGACTTACTCAGCTGAGTTAAATCTTCCAAGTTTGGACTCAGAGTGTGTTATATGTCTTTCAGAGTTCATAAATGGTGATAAGGTGAGAATTTTGCCGAAGTGTAACCATGGTTTTCATGTTAGATGCATTGATAAATGGTTAAGTTCACATTCTTCTTGCCCTAAGTGTAGACAGTGTCTTATTGAGACTTGTGAAAAGATTATTGGGTGCACCACAAGGCAAGAAACCTCATCAATACAACAACCTATGTTGCTTGTGCCTGAAACGATTGTAACCATAGCGCCATTAGAGCCAGAAGGTTTGGTTCTTAACTATAGGGAAGTTAGTTAG 675 0.3778 MYPSTSFTSHPLLENFNSRRLLQTSLKPLNSVNPPTSTNIHNSTESSNFDANVVMVLSVLLCALICSLGLNTIIRCALKCSNLVANDLSTTNTYTPTVVANTGIKKKALKTFTTVTYSAELNLPSLDSECVICLSEFINGDKVRILPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIETCEKIIGCTTRQETSSIQQPMLLVPETIVTIAPLEPEGLVLNYREVS* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0539 224 PANTHER RING-H2 FINGER PROTEIN ATL78 9 222 IPR044602 GO:0016567|GO:0016740
Lan15g0539 224 Pfam Ring finger domain 129 172 IPR001841 -
Lan15g0539 224 SUPERFAMILY RING/U-box 108 177 - -
Lan15g0539 224 SMART ring_2 130 171 IPR001841 -
Lan15g0539 224 PANTHER RING-H2 FINGER PROTEIN ATL78 9 222 - -
Lan15g0539 224 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Lan15g0539 224 CDD RING-H2_PA-TM-RING 129 172 - -
Lan15g0539 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 176 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0539 Lan-Chr15 12521876 12522715 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0539 18 176 C3H Transcription Factor Family AT3G10910 43.293 4.99e-41 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0539 K19040 - gmx:100787934 309.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0539 15 12521876 12522715 Lan14g0491 14 10495047 10496716 LSH
Lan12g0677 12 13578051 13578855 Lan15g0539 15 12521876 12522715 PCT
Lan1g1873 1 33908397 33909642 Lan15g0539 15 12521876 12522715 PCT
Lan1g1572 1 26597809 26598552 Lan15g0539 15 12521876 12522715 PCT
Lan15g0539 15 12521876 12522715 Lan12g0677 12 13578051 13578855 PCT
Lan15g0539 15 12521876 12522715 Lan1g1873 1 33908397 33909642 PCT
Lan15g0539 15 12521876 12522715 Lan1g1572 1 26597809 26598552 PCT