Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0536 ATGCTGATATCTAATGAAGGAGACAGTGATGTGTTCTTTGACTCGGTGGATTATTTGTCACCTCTTCATGAATCTGTTTTGACCAGACAAGAGTTTGGTTATGAGGTTTGGGTGAATGAGCCTCTTAGTGTGAAGGAAAGAAGGGAAAAGTTTTCACAATGGATGGGTTTAGTTTATGGTACTTCAAAGGTTTGTTTGCAAGAGAAAATGGTGACCTTTGATGAGTCTTTGATAAGTTTGGAACTGGAAAGGGTCAAGGATTGCAATGGAGCAGTGTCAAATGCTTGCATTGTGCTTGATGATCGAGTTCCTGAGAAATTGATTAACTCAGGATGTGAAGCAACTTCTGAAGAACAAGTTTTGTTGAATGAACTCAAAGGGTGCCAAGACCAAGATGATAAAACAGATGGAAGTTTCCAAGGGAAGGTGTTTGAGCCTTCTTCAGATCAAGAGCACATAGATAGAGAAACTGAAGCTGTAGAAGAATTTCGGGACTTCGAAGCTTTTAAGAAGAAAAAGAAAAATTGGTGGGCACGCTTTGTAGACAGCAGAAAAGGAAAAGACATAACAAAATTGAGTAGAAGGGCAAGTAAAAGTGGTAGAATACATGTAAGACAGAACAAAAAGAAGTGGATGGAATTGAGTGCACTCTACATTGGACAAGAGATTAGAGCACACAAAGGACTGATCTGGACTATGAAATTTAGTCACACTGGCAAGTATCTAGCTAGTGGAGGTGAAGACGGTGTTATACGCATATGGCGTGTTGTATCCATGGAAACGTCCAGTTTTCGCTTCAGTGAAGAAGATAGCATTATTAGCAAAGTGAAACATGACATCTCTTGTTCTCAGAGGAAAAACTCTAGCTATTCATTTAATGTGCTTCCAAACAAGATCTTACAAATTGAGGAATCACCACTGCAAGAATTTTATGGTCATTCCGGTGATGTCTTGGATTTAGCTTGGTCTAGTTCAGATATTCTCCTTTCATCTTCTACGGATAAAACCGTCCGCTTGTGGCAAATTGGTTCGAATAAATGTCTTAATGTTTTCCATCACAAAGACTATGTGACATGCATTCAATTCAACCCTGTTGATGAGAATTACTTCATCAGTGGGTCCATAGATGGAAAAGCCCGAATATGGAGTGTAAATGAAGAGAGCGTAGTTGACTGGGCCGACGTACGAGATGTCATAAGTGCTATAAGTTACAAGCCAGATGGAAAGGGTTTCGTAGTGGGTACCCTTACAGGCACTTGCCGCTTTTTTATTGCTTCAGGCAAATATTTCCAGCTAGAGGCACAGGTTCGTGTCAACGGAAAAAAGAGAACTTCTGGCAACAAGATCACTGGCATTCAGTTTTCCCAGAAAAACCATCAGAAAGTTATAATCACATCAGAAGATTCCAAAGTTAGAATATATGAAGGTGTTGAACTTGTTCAGACATACAAAGGCCTTCCAAAGTCGGGAAGTCAGATGTCCGGTTCATTTGCATCAACTGGAAAACATTTAATTTCAGTTGGAGATGACTCTCGTATTTATATGTGGAACTTCAATGAATTAGGACATGCTCTTTCCAAACACACAAAATCTAAGTATTCCTGCGAATACTTTTCCTCCAAGGGCGTCACCGTGGCAATACCTTGGTCAGGCACGAGCGCAAGCTCTCGCTATAATTCGTCATGCTATTCTTCAGAAATGAAACCTCCATTAGAGGCTGTTCCTTGGGCTAGAGAGTCACAAAGGTTTTCTTTTCGCAGTTGGTTCTCAATCGACAGTACATGTCGAGGTTCAATGACATGGCCAGAGGAGAAGTTTCTCAATTGGGATTTACCTTTCACCGACGATGAATTTGATTACAAACAGTTATATCGCAAAGATCCTTGCCTTGACAATTGCGTATCAGAAACATGGGGACTATCAATTGTGGCAGCTGGTTGTGATGGAACTATCAAGACATTCCATAACTTTGGATTACCTGTTAGGCTTTAA 1992 0.4036 MLISNEGDSDVFFDSVDYLSPLHESVLTRQEFGYEVWVNEPLSVKERREKFSQWMGLVYGTSKVCLQEKMVTFDESLISLELERVKDCNGAVSNACIVLDDRVPEKLINSGCEATSEEQVLLNELKGCQDQDDKTDGSFQGKVFEPSSDQEHIDRETEAVEEFRDFEAFKKKKKNWWARFVDSRKGKDITKLSRRASKSGRIHVRQNKKKWMELSALYIGQEIRAHKGLIWTMKFSHTGKYLASGGEDGVIRIWRVVSMETSSFRFSEEDSIISKVKHDISCSQRKNSSYSFNVLPNKILQIEESPLQEFYGHSGDVLDLAWSSSDILLSSSTDKTVRLWQIGSNKCLNVFHHKDYVTCIQFNPVDENYFISGSIDGKARIWSVNEESVVDWADVRDVISAISYKPDGKGFVVGTLTGTCRFFIASGKYFQLEAQVRVNGKKRTSGNKITGIQFSQKNHQKVIITSEDSKVRIYEGVELVQTYKGLPKSGSQMSGSFASTGKHLISVGDDSRIYMWNFNELGHALSKHTKSKYSCEYFSSKGVTVAIPWSGTSASSRYNSSCYSSEMKPPLEAVPWARESQRFSFRSWFSIDSTCRGSMTWPEEKFLNWDLPFTDDEFDYKQLYRKDPCLDNCVSETWGLSIVAAGCDGTIKTFHNFGLPVRL* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0536 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 310 342 - -
Lan15g0536 663 SUPERFAMILY WD40 repeat-like 219 518 IPR036322 GO:0005515
Lan15g0536 663 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 663 - -
Lan15g0536 663 Pfam WD domain, G-beta repeat 222 254 IPR001680 GO:0005515
Lan15g0536 663 Pfam WD domain, G-beta repeat 305 340 IPR001680 GO:0005515
Lan15g0536 663 Pfam WD domain, G-beta repeat 346 383 IPR001680 GO:0005515
Lan15g0536 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 223 264 IPR001680 GO:0005515
Lan15g0536 663 Gene3D - 208 560 IPR015943 GO:0005515
Lan15g0536 663 PRINTS G protein beta WD-40 repeat signature 242 256 IPR020472 -
Lan15g0536 663 PRINTS G protein beta WD-40 repeat signature 328 342 IPR020472 -
Lan15g0536 663 PRINTS G protein beta WD-40 repeat signature 370 384 IPR020472 -
Lan15g0536 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 350 392 IPR001680 GO:0005515
Lan15g0536 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 310 350 IPR001680 GO:0005515
Lan15g0536 663 SMART WD40_4 476 517 IPR001680 GO:0005515
Lan15g0536 663 SMART WD40_4 439 475 IPR001680 GO:0005515
Lan15g0536 663 SMART WD40_4 344 383 IPR001680 GO:0005515
Lan15g0536 663 SMART WD40_4 385 424 IPR001680 GO:0005515
Lan15g0536 663 SMART WD40_4 303 341 IPR001680 GO:0005515
Lan15g0536 663 SMART WD40_4 216 255 IPR001680 GO:0005515
Lan15g0536 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 350 385 - -
Lan15g0536 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 223 256 - -
Lan15g0536 663 PANTHER WD REPEAT DOMAIN 44 1 663 IPR040324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0536 Lan-Chr15 12442705 12447456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0536 307 514 U-box Gene Family AT2G33340 25.926 1.67e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0536 K20241 - gmx:100780979 889.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0536 15 12442705 12447456 Lan3g0721 3 13203804 13208768 LSH
Lan12g0682 12 13629032 13635285 Lan15g0536 15 12442705 12447456 PCT
Lan1g1569 1 26424661 26430104 Lan15g0536 15 12442705 12447456 PCT
Lan15g0536 15 12442705 12447456 Lan12g0682 12 13629032 13635285 PCT
Lan15g0536 15 12442705 12447456 Lan1g1569 1 26424661 26430104 PCT