Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0535 ATGGATTCAGATCAGGGGAAGCTTTTCATTGGTGGGATTTCATGGGACACTAACGAGGACAAGCTCAGAGACTATTTCGGGAACTACGGTGATGTTTGTCACGCTTCTGTTATGAGGGACAAGAACACAGGCAAGCCCAGAGGTTTTGCTTTCGTTGTTTTTTCTGATCCATCTGTTATTGATAGGGTTCTTGAAGATACCCACGTTATTGATGGGAGAACGGTTGATGCCAAGAGAGCCCTCTCAAGAGAGGATCAACAGGTTTCTTTTAATTCTAGAAGCGGTAATTCCAACTCTGCTAGGAACTCCGGAAATGGTGGAAATATCAGGACCAAAAAAATATTTGTTGGAGGGTTACCTCCCACCCTGACTGAAGAAAAATTTCGTGAATACTTTGAGGCTTATGGCCAAATAACTGATGTAGTAGTCATGTATGACCAGAATACGGGACGACCTCGAGGATTTGGGTTTATTTCTTTTGATAATGAAGATGCAGTTGACAGTGTTCTGTACAAGACATTTCATGAATTAAGTGGTAAAAATGTGGAGGTAAAGCGTGCACTTCCCAAGGATGCTAATCCTGGTGCAAGTAACCGCATCGGTGGTGCAGAATGTGGTGGGTATCTGGGGTATGGGGCATCAGGAGGCAACCAAAATGCATATGATGGTCGGATAGATTCAAGTAGGTATATGCAGCCTCAGAACAATGCAAGTGGATTCCCACCTTATGGTTCTTCTGGGTATACTGCTCCTGGGTATGGATATGGTGCCGCTAATAATGGCATTGGTTATGGTGCCGCTAATAATGGCATTGGTTATGGTGCATATGGAGGTTATAGTGGTGCCACTGCTGGGTATGGTGGACCTGCTGGTGCATCATATGGGAATCCAAATGCTGCTAATGCTGCTTATGCTGGTGGTCCACCAGGTGGCCCGAGGAGTTCATGGTCTGCTCAGGCCCCCTCTGGTTATGGGTCTGCAGGCTATGGGAGCACTGCTCCTTGGGGTGCTCCAAGCGGTGGTGCTGGAACTGGTAGTGGTGGCCCTGGTTCAGCACCTTCAGGTCAATCCCTGAGTGCAGTTGCTGGATATGGGAATCAAGGTTATGGATACGGTGGAAGTGATAGTTCTTATGGGAATCCAGGTGCTTTTGGTGCTGTTGGAGGGCGTTCTGGGAGTGCCCCAAATAGCGAGCTACAAGGCAGTGGTGGCAGCTACGTGGGAAGTGGCTATAGCGATTCAAATGGAAACTCAGGGTATGGAAATTATGGGACTCGTCCGGGAAATGGTGCTGTCCATGCTGGGCAAGGTGGTTATGGTGGCGGCTATGGTGATGTTCAGTCCCGACATGCTCAACAGATGTAG 1365 0.4799 MDSDQGKLFIGGISWDTNEDKLRDYFGNYGDVCHASVMRDKNTGKPRGFAFVVFSDPSVIDRVLEDTHVIDGRTVDAKRALSREDQQVSFNSRSGNSNSARNSGNGGNIRTKKIFVGGLPPTLTEEKFREYFEAYGQITDVVVMYDQNTGRPRGFGFISFDNEDAVDSVLYKTFHELSGKNVEVKRALPKDANPGASNRIGGAECGGYLGYGASGGNQNAYDGRIDSSRYMQPQNNASGFPPYGSSGYTAPGYGYGAANNGIGYGAANNGIGYGAYGGYSGATAGYGGPAGASYGNPNAANAAYAGGPPGGPRSSWSAQAPSGYGSAGYGSTAPWGAPSGGAGTGSGGPGSAPSGQSLSAVAGYGNQGYGYGGSDSSYGNPGAFGAVGGRSGSAPNSELQGSGGSYVGSGYSDSNGNSGYGNYGTRPGNGAVHAGQGGYGGGYGDVQSRHAQQM* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0535 454 Gene3D - 4 88 IPR012677 -
Lan15g0535 454 MobiDBLite consensus disorder prediction 84 112 - -
Lan15g0535 454 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lan15g0535 454 MobiDBLite consensus disorder prediction 393 424 - -
Lan15g0535 454 SUPERFAMILY RNA-binding domain, RBD 111 217 IPR035979 GO:0003676
Lan15g0535 454 SMART rrm1_1 113 185 IPR000504 GO:0003723
Lan15g0535 454 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lan15g0535 454 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
Lan15g0535 454 MobiDBLite consensus disorder prediction 338 359 - -
Lan15g0535 454 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Lan15g0535 454 MobiDBLite consensus disorder prediction 389 454 - -
Lan15g0535 454 Gene3D - 109 199 IPR012677 -
Lan15g0535 454 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 452 - -
Lan15g0535 454 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Lan15g0535 454 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 171 IPR000504 GO:0003723
Lan15g0535 454 MobiDBLite consensus disorder prediction 84 109 - -
Lan15g0535 454 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0535 Lan-Chr15 12410622 12432716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0535 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 23.858 3.30e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0535 K14411 - gmx:100811267 455.292