Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0534 ATGATTCCTGTCACATCATCACAATCACCATCGGCGTCTCAGAGGCATGTCGGCTTCATCCACCGCACTCAGGCACCGCAGCTCCTTCCTCATTTGTTGCCGGAGTCGTCATCACCGTCGTGGTTCATGTACCAGTCGCAGACGGAGATAATGGTGAGGGCTGAATACACCATGGTGGAGAGCGACAGTTATAGTGACCTGAACTGTGAGAAATGCGGCTCCGGTGAGTTGCCAGAAGAGCTTCTTCTTTGCGATAAATGCGACAAAGGATTTCATATGAAATGTTTGAGGCCAATCGTGGTTAGAGTCCCGATTGGATCGTGGTTTTGCCCTAATTGTTCGGGAGAGAAAGTGAAACGAGTTACAAGTTTCTCTCAGAAGAAGATATATGATTTTTTTGGGATTCAGGTTGATCCTAATGTTCAAGAGAAAGGTTCTTCTTCTCAAGATGCTAAGAGGCGCAAGAAGCGTTCAGGACCTCGAATCGTACAGAAGAAAAAGAGGAGAATATTACCATTTGTTCCTTCAGAAGATCCTGCCCAGAGACTGAAACAGATGGGTTCTCTTGCTTCTGCTTTAACAGCATTAAATATGGAATTCAGTGATCACCTCACTTACTTGCCCGAAATGGCTCCTAGATCCGCTAATGAAGCCAGCTTAGAAAGTGGTGGCATGCAGATTCTTACCAAGGAGGATACTAGAACTGTGGAGCTCTGCAAAGCTATGTCCAAAAGAGGCGAATGCCCTCCTTTCATGGTTGTTTTTGATTCATGTGAAGGCTATACTGTGGAGGCTGATGGCCCAATTAAGGATATGACATTCATTGCTGAATACATTGGAGATGTGGATTACCTGAAGAAACGGGAACGTGATGATTGCGATAGCATGATGACCCTTCTTTTACCATCAGAACCTGCCCAAAATCTTGTCATTTGCGCGGACAGACGTGGAAATATTGCCCGCTTCATTAGTGGCATAAACAATTATACTCAGGAAGGTAGGAAGAAACAGAACTGCAAATGTTTAAGGTACAATGTTAATGGGGAATGCAGGGTCTTTTTGGTCACGACTCGTGATATTGCCAAGGGGGAGAGGCTTTACTATAACTATAATGGTCATGAGGATGAATACCCAACTCAGCATTTTGTCTGA 1152 0.447 MIPVTSSQSPSASQRHVGFIHRTQAPQLLPHLLPESSSPSWFMYQSQTEIMVRAEYTMVESDSYSDLNCEKCGSGELPEELLLCDKCDKGFHMKCLRPIVVRVPIGSWFCPNCSGEKVKRVTSFSQKKIYDFFGIQVDPNVQEKGSSSQDAKRRKKRSGPRIVQKKKRRILPFVPSEDPAQRLKQMGSLASALTALNMEFSDHLTYLPEMAPRSANEASLESGGMQILTKEDTRTVELCKAMSKRGECPPFMVVFDSCEGYTVEADGPIKDMTFIAEYIGDVDYLKKRERDDCDSMMTLLLPSEPAQNLVICADRRGNIARFISGINNYTQEGRKKQNCKCLRYNVNGECRVFLVTTRDIAKGERLYYNYNGHEDEYPTQHFV* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0534 383 Pfam PHD-finger 69 114 IPR019787 -
Lan15g0534 383 ProSiteProfiles Zinc finger PHD-type profile. 66 116 IPR019787 -
Lan15g0534 383 ProSitePatterns Zinc finger PHD-type signature. 69 113 IPR019786 -
Lan15g0534 383 Gene3D SET domain 154 383 IPR046341 -
Lan15g0534 383 ProSiteProfiles SET domain profile. 249 371 IPR001214 GO:0005515
Lan15g0534 383 PANTHER HISTONE ACETYLTRANSFERASE 43 381 - -
Lan15g0534 383 SUPERFAMILY FYVE/PHD zinc finger 54 120 IPR011011 -
Lan15g0534 383 MobiDBLite consensus disorder prediction 141 164 - -
Lan15g0534 383 SUPERFAMILY SET domain 243 374 IPR046341 -
Lan15g0534 383 SMART PHD_3 68 114 IPR001965 -
Lan15g0534 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 128 IPR013083 -
Lan15g0534 383 SMART set_7 249 377 IPR001214 GO:0005515
Lan15g0534 383 CDD SET_ATXR5_6-like 246 383 - -
Lan15g0534 383 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 43 381 - -
Lan15g0534 383 CDD PHD_RSF1 68 113 - -
Lan15g0534 383 Pfam SET domain 276 371 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0534 Lan-Chr15 12392036 12397956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0534 66 119 C2H2 Transcription Factor Family AT3G01460 39.286 2.24e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan15g0534 SET 4.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0534 K24406 - gmx:100785817 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0534 15 12392036 12397956 Lan3g0720 3 13164396 13168560 LSH