Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0470 ATGCCTTCTGAAATAACGGAACAGCGGGGTGTTTCAGCCACATCTCGTTTTTGTGATGACATCTCCTTTCCTCCTGAGATGAATGTTGGATTACAGAAGCTAAAATCCAATCATGACAAGTACACACAAGGAAAGAGTGAAACGGCAGCATCTCCTGGCGGCATTTTGAGTGCTTCATCACCCCTTCAAATGAATGCAAAAACTGGCTTGCCATTGTCTCAGACTAGTCTATCTGGGGAAATTACCGAAAACACACATTTTGGTGGAGAAGGCATTACAGATGTGCTGAAGAATACCCATGAACGGCTTAATTATAACCTGAGATCATTGTCTGGTGTGCATATGCAACCATCATCTGGCTCATATGGTTTAATTGGGAACAAGACTCTCACCAATGTGGCCTCTCGTGAAAGTAGCCTATTCTCAAGCTCACTGTCTGATATATTTAGCCAAAAGTTGAGGTTGTTGGGGAACGGTGTTCTGTCTGGTCAGCCCATAAATGTCGGTTCCCTTCCCGAGGAAGAACCATATAAGTCTCTTGAAGAAATTGAGGCTGAAACTATTGGAAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTCGCTGACGAGCTAGGAGGCAGTTTACATGCTAGAACAAGTGACGATTTTGATGATTTTGATTTGTTCAGCAGCGGTGGAGGCATGGAGTTGGAAGGGGATGCACATCTAGTTTCAGAAAAAAGAACCAGTTACATGGGTGTTGATCTCGGTCACTATTTTAAAGGGAAAGTTCCTTTTGGTGAACAGTCTTCTAGAACACTTTTTGTCAGAAACATTAACAGCAATGTAGAAGATTCTGAGCTAAAGGCTCTCTTTGAGCAATATGGTGATATCCGGACCCTTTATACTGCCTGCAAGCATCGTGGGTTTGTTATGATTTCTTATTATGACATTAGGGCTGCACAAAATGCAATGAAAGCACTCCAAAATAGGTCATTGAGGTCTAGGAATCTGGATATACATTATTCATTTCCGAAGGTCAATGTTCCAGACAAGGATATTGGTCATGCCACACTGATGATATCTGGTCTTAATTCATCTGTTCTGAATGATGAGCTTAAACATATTTTTGGGTTTTATGGAGAAATTAAAGACATATTTGAATCTCCAGAAATGGACCATATCAAATTTATTGAGTTTTATGATGTACGAGCTGCAGAATCTTCTCTTCGGGAATTGAACAAGATCTGCATTGCTGGGAAGCAGATTAAGCTTGAACCTTGCCATCCTAGGATTGCAGAATGTCTGTTGCAGCAGTCTCAGAAAGGACAAGATGCACCAGATATTGGTCATAATCTTAATGAGAACCTATTAGCAAGACCGAAGGCAACATTGGCTTCTAGAGTAATTGCATCTGGTGGAAGCTTGGAAAATGGATATAATCAGGGATTTCAATCTGCAACACAGCTACCTTTGAATGCTTATATTGATAATAACACATTATTTCCTATGAATTCTAGCATTCACAAGACAGCAAGAGGCGCATCTGCTGGAAAATTATCTGGTGTTTGTGAGTCCAGTAATGCTGTTGATGCAATGAAATTTGCTTCGATTCCAAGATTCCAACCTCATTCTTTACCCGAGTATCATGGTGGTTTAGGTAATGGTAGTCCTTACACCTTTTCAAGCACCATAAGCAACATGGCTCCCAATATTGGTACTGGGTCGACAGAAGTCTCTGGCAACAGGCACATTCAGGGATTGGGCTCAACTGGGAATCTACCCGAATTTAATGCAGGAGGGAATGGAAGCCGCCCACATGGACTTTATCATATGTGGAACAGCTCCAACTTGCACCAGCAACACCCATCAAATGCCATGCTTTGGAAGAATACACCATCCTTTGTTAATGGTGCTGGTACCCCATGTCTTCAACAGATGCCTAGCTTTCCTGGAACACTGCCTCATGTGCTGAGAGCAACACATGTAGACCACCATGTTGGCTCGGCACCAGTTGTTACAGCTTCGCCCTGGGAAACACAACGTTCTTACTTGGGAGAGTCTCCTGATGCTTCTGGTTTACGGTTGGGCTCTCTAGGAAGTCCAGGTTTTCCTGGTGCCTGGCAGTTGCATTATCCAGACTTTTCTCCTCGCAATATGTTGTCTCATGTTGGTGGGAATGGTGCCGAATTGATTTCGAATGCTGGGCAGGGCTCTCCTAAGCAGCTGTCACATGTTTACCCTGGGAGGCTTCCCATGACTTCAATGTCTAAATTTGATTCTACCAATGAACGAATGAGAAACTTCTATAATCGTAGAAGTGACGCAAACACTAACAATGCGGATAAAAAACAATTTGAACTTGACCTAGGTCGCATACTGCGTGGAGAGGACAGCCGAACAACACTTATGATAAAAAATATTCCCAACAAGTATACATCAAAGATGCTTCTTGCTGCCATAGATGAGCAATGTCGGGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGAACAAATGTAACGTTGGCTATGCATTCATCAATATGATTGATCCTGGTCAAATTATTCCATTCCACCAGGCTTTTCATGGAAAGAAATGGGAGAAGTTCAACAGTGAAAAGGTAGCTGTTCTTGCATATGCCCGAATTCAAGGAAAATCTGCTCTTATTGCTCATTTCCAGAATTCAAGCTTAATGAATGAAGATAAACGTTGCCGCCCTATTCTCTTCCATACAGATGGCCCGAATGCTGGTGATCCGGAGCCTTTTCCCTTGGGTAACAATATCAGACTGAGGACCGGAAAGTCTCGTGCTAGTGCTAGCGAGGAGAATCGCAGCCAAGGGAATCCCTTAACTTCGGCAAGTGGAGAGGAGTCTGCTAATGGAATAGAGTCATCAAGAAACTCTGACTAA 2904 0.4263 MPSEITEQRGVSATSRFCDDISFPPEMNVGLQKLKSNHDKYTQGKSETAASPGGILSASSPLQMNAKTGLPLSQTSLSGEITENTHFGGEGITDVLKNTHERLNYNLRSLSGVHMQPSSGSYGLIGNKTLTNVASRESSLFSSSLSDIFSQKLRLLGNGVLSGQPINVGSLPEEEPYKSLEEIEAETIGNLLPDEDDLFSGVADELGGSLHARTSDDFDDFDLFSSGGGMELEGDAHLVSEKRTSYMGVDLGHYFKGKVPFGEQSSRTLFVRNINSNVEDSELKALFEQYGDIRTLYTACKHRGFVMISYYDIRAAQNAMKALQNRSLRSRNLDIHYSFPKVNVPDKDIGHATLMISGLNSSVLNDELKHIFGFYGEIKDIFESPEMDHIKFIEFYDVRAAESSLRELNKICIAGKQIKLEPCHPRIAECLLQQSQKGQDAPDIGHNLNENLLARPKATLASRVIASGGSLENGYNQGFQSATQLPLNAYIDNNTLFPMNSSIHKTARGASAGKLSGVCESSNAVDAMKFASIPRFQPHSLPEYHGGLGNGSPYTFSSTISNMAPNIGTGSTEVSGNRHIQGLGSTGNLPEFNAGGNGSRPHGLYHMWNSSNLHQQHPSNAMLWKNTPSFVNGAGTPCLQQMPSFPGTLPHVLRATHVDHHVGSAPVVTASPWETQRSYLGESPDASGLRLGSLGSPGFPGAWQLHYPDFSPRNMLSHVGGNGAELISNAGQGSPKQLSHVYPGRLPMTSMSKFDSTNERMRNFYNRRSDANTNNADKKQFELDLGRILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHQAFHGKKWEKFNSEKVAVLAYARIQGKSALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGNNIRLRTGKSRASASEENRSQGNPLTSASGEESANGIESSRNSD* 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0470 967 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 267 340 IPR000504 GO:0003723
Lan15g0470 967 MobiDBLite consensus disorder prediction 43 61 - -
Lan15g0470 967 SUPERFAMILY RNA-binding domain, RBD 797 882 IPR035979 GO:0003676
Lan15g0470 967 SMART rrm1_1 268 336 IPR000504 GO:0003723
Lan15g0470 967 SMART rrm1_1 797 875 IPR000504 GO:0003723
Lan15g0470 967 SMART rrm1_1 353 421 IPR000504 GO:0003723
Lan15g0470 967 MobiDBLite consensus disorder prediction 929 967 - -
Lan15g0470 967 Gene3D - 350 442 IPR012677 -
Lan15g0470 967 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 961 - -
Lan15g0470 967 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 352 425 IPR000504 GO:0003723
Lan15g0470 967 CDD RRM1_MEI2_like 266 341 IPR034453 -
Lan15g0470 967 MobiDBLite consensus disorder prediction 41 61 - -
Lan15g0470 967 Pfam RNA recognition motif 2 795 891 IPR007201 -
Lan15g0470 967 CDD RRM3_MEI2_like 798 883 IPR034454 -
Lan15g0470 967 MobiDBLite consensus disorder prediction 906 967 - -
Lan15g0470 967 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 961 - -
Lan15g0470 967 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 354 419 IPR000504 GO:0003723
Lan15g0470 967 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 269 333 IPR000504 GO:0003723
Lan15g0470 967 Gene3D - 261 349 IPR012677 -
Lan15g0470 967 SUPERFAMILY RNA-binding domain, RBD 264 425 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0470 Lan-Chr15 11022898 11031430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0470 262 429 Eukaryotic Initiation Factors Gene Family AT3G16380 24.339 1.40e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0470 - - aprc:113865455 1454.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0470 15 11022898 11031430 Lan14g0379 14 8249290 8257900 LSH
Lan12g0737 12 14588054 14596435 Lan15g0470 15 11022898 11031430 PCT
Lan15g0470 15 11022898 11031430 Lan12g0737 12 14588054 14596435 PCT