Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0467 GCAGAAGCTGCACTTTACAGAGAACTATGGTATGCTTGTGCTGGTCCTCTTGTTACTGTTCCACGGGAAAGAGAACTTGTCTTCTATTTCCCTCAAGGCCATATTGAGCAGGTGGAGGCGTCAACTAATCAGGTTGCGGAGCAGCAAATGCCAGTTTACGATCTCCCTTCTAAGATTCTTTGTCGTATCATGAACGTGCAGCTTAAGGCGGAGCCAGATACGGATGAGGTTTTTGCCCAAGTGACTTTACTTCCGGAGTCAAACCAAGATGAGAATGCTGTTGAGAAAGAGCCTCCACCACCTCCGCCGGCACGATTCCATGTACATTCATTTTGTAAGACACTGACTGCTTCTGATACCAGCACCCATGGTGGGTTTTCCGTGTTAAGACGACATGCCGATGAATGTCTTCCTCCACTAGATATGACAAAGCAGCCACCCACTCAGGAATTGGTTGCTAAAGATTTGAATGCTAATGAGTGGCGATTTCGACATATCTTTCGTGGTCAACCACGTAGACACTTACTCCAAAGTGGTTGGAGTGTTTTTGTCAGCTCCAAGAGGCTAGTTGCTGGGGATGCATTTATATTTCTGAGAGGTGAGAATGGGGAACTTCGAGTTGGTGTTAGGCGAGCAATGAGACAGCAGGGTAATGTTCCATCTTCAGTTATCTCTAGTCACAGCATGAATCTTGGGGTTCTTGCTACTGCTTGGCATGCCATCTCGACTGGGACCATGTTCACTGTTTATTACAAGCCCAGGACCAGCCCCGCCGAATTTATTGTACCATACAATCAGTACATGGATTCTCTCAAAAATAGGTATACCATTGGGATGCGTTTTAAAATGAGGTTTGAAGGTGAAGAGGCTCCAGAGCAGAGGTTTACTGGTACCGTTGTTGGAATAGAAGATTCTGACTCCAAAACATGGCCTGATTCCAAATGGAGAAGCCTCAAGGTGAAATGGGATGAAACATCTAACATACCACGTCCTAATCGAGTTTCCCCATGGAAAATTGAGCCTACTCTTGCTCATTCACCTCTGAACCCTCTTCCAGTTCCCAGGGCTAAAAGGCCTCGGTCTAATGCAGTTCCATCTTCTCCCAATTCTTCTGCTCTTCCTCGAGAAGCATTATCTAAAGTAAGCTTACACCCTTTACCAACAAATGGATTCCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAAAGGAAAATTTGAAGTTAGCAACGAGTTTGATACTGTCGAGAGGTCTGTCGCCCTGCCACCTGCTGTAGCAGATGCGAAGTTTGATGTTCCGATTTTAAGAAGGCATGGATCAGAGAACTGGATGTCAATGGGAAGGCATGAGCCAGCATATTCAGATCTTCTTTCAGGGTTTGGCGCCAGTGGAGATCCCTCCCATCAACCCTTGGTTGATCAAATTTGTCATGTAGCTTATTCTGCAAGTAAGCATTCTTTGGATCATGAAGCAAAATTTCATGTGCACCATCCATGGCCTGTAATGCCCTCTAGTCTATCATTAAACCTCCTGGACTCTAATTCAAAAGGCTCTGCACATGTTGATACAACTTGTCAAGCTCGAGGGAATTTGAGGTGCAGGACATTTGATGAATACCCTGTATTCCATCATGGTCATAAAGTTGAGCATCCACATGGAAACTTGATTCCACCACCATCCCCAACTCAACATGAGAGTCTTAGTTCAAGAGAGATTATGTCTAAGCCAATGTCTCTGAAAACTAGTGAGGCTATGATACTTAAAGATGGTGACTGTAAGCTATTTGGCATCTCACTTATCAGTAGTGCCATTGCACCTAAGCCTTCACTATTACAAAGAAATGCGACAAGTGAGCCTGCTGGTGAAATGCATCTTACATCACACCAGCCACAAAGTTCTGGAAATGATCAGATGTCAGAACACTCGAAGAACTCAAAACCTTCAGATGGTCCAGTTGTCATGGGTGATCATGAAAAGCCAAAACTTCTTCAAGCCAAACCGTCTTGTGTTTCTGCTAGGAGTTGCACCAAAGTTCACAAGAAGGGTATTGCACTTGGTAGATCAGTTGACCTTACAAAGTACTGTGACTACAATGGATTAATTGCTGAATTGGATCGGCTGTTTGAATTTGGAGGTGAATTAATGTCACCAAACATGGACTGGCTTATTGTCTATACTGATAATGAGGGTGATATGATGCTTGTTGGTGATGATCCATGGCAGGAGTTCTGTACCATGGTTCACAAAATATATATCTATCCTAAAGAGGAGATTCAGAAAATGAGCCCTGGGACCCTCTGTTCAAACAATGAAGATAATCATTCAGCTAGCGAATGTGCAGAAGCAAAAGAAGTTAAAAGCCAGCTGAATCAGATGTTAAATTAA 2388 0.4393 AEAALYRELWYACAGPLVTVPRERELVFYFPQGHIEQVEASTNQVAEQQMPVYDLPSKILCRIMNVQLKAEPDTDEVFAQVTLLPESNQDENAVEKEPPPPPPARFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLNANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMNLGVLATAWHAISTGTMFTVYYKPRTSPAEFIVPYNQYMDSLKNRYTIGMRFKMRFEGEEAPEQRFTGTVVGIEDSDSKTWPDSKWRSLKVKWDETSNIPRPNRVSPWKIEPTLAHSPLNPLPVPRAKRPRSNAVPSSPNSSALPREALSKVSLHPLPTNGFPRVLQGQEFSTLKGKFEVSNEFDTVERSVALPPAVADAKFDVPILRRHGSENWMSMGRHEPAYSDLLSGFGASGDPSHQPLVDQICHVAYSASKHSLDHEAKFHVHHPWPVMPSSLSLNLLDSNSKGSAHVDTTCQARGNLRCRTFDEYPVFHHGHKVEHPHGNLIPPPSPTQHESLSSREIMSKPMSLKTSEAMILKDGDCKLFGISLISSAIAPKPSLLQRNATSEPAGEMHLTSHQPQSSGNDQMSEHSKNSKPSDGPVVMGDHEKPKLLQAKPSCVSARSCTKVHKKGIALGRSVDLTKYCDYNGLIAELDRLFEFGGELMSPNMDWLIVYTDNEGDMMLVGDDPWQEFCTMVHKIYIYPKEEIQKMSPGTLCSNNEDNHSASECAEAKEVKSQLNQMLN* 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0467 795 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Lan15g0467 795 SUPERFAMILY CAD & PB1 domains 674 751 - -
Lan15g0467 795 ProSiteProfiles PB1 domain profile. 674 756 IPR000270 GO:0005515
Lan15g0467 795 PANTHER AUXIN RESPONSE FACTOR 2 2 781 - -
Lan15g0467 795 MobiDBLite consensus disorder prediction 619 647 - -
Lan15g0467 795 MobiDBLite consensus disorder prediction 619 657 - -
Lan15g0467 795 SMART B3_2 111 213 IPR003340 GO:0003677
Lan15g0467 795 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 781 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lan15g0467 795 MobiDBLite consensus disorder prediction 345 375 - -
Lan15g0467 795 Gene3D - 670 763 - -
Lan15g0467 795 SUPERFAMILY DNA-binding pseudobarrel domain 107 240 IPR015300 -
Lan15g0467 795 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Lan15g0467 795 CDD B3_DNA 109 211 IPR003340 GO:0003677
Lan15g0467 795 Pfam AUX/IAA family 720 761 IPR033389 -
Lan15g0467 795 Gene3D - 274 346 - -
Lan15g0467 795 Pfam Auxin response factor 237 319 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lan15g0467 795 Gene3D - 108 213 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0467 Lan-Chr15 10904201 10908801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0467 2 795 B3 DNA Binding Superfamily AT5G62000 63.197 0.0 1004
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lan15g0467 AUX_IAA 9.1e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0467 - - gmx:100803498 1213.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0740 12 14640727 14643938 Lan15g0467 15 10904201 10908801 PCT
Lan1g1499 1 25271330 25276148 Lan15g0467 15 10904201 10908801 PCT
Lan15g0467 15 10904201 10908801 Lan12g0776 12 15004774 15007082 PCT
Lan15g0467 15 10904201 10908801 Lan1g1469 1 24690465 24692826 PCT
Lan15g0467 15 10904201 10908801 Lan1g1927 1 34539916 34544259 PCT