LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan15g0445	ATGGCAGTTATTCTCTACAGCCCTACCTCTGAATCTGGCTTGCAGAAGCTTGATGAATATCTTCTCACCCGCAGTTATATCTCTGGGTACCAAGCCTCAAAGGATGATCTTACTGTGTATGCACTTTTGTCCGGTGTTCCGTCCGACAAATATGTCAATGTTTCCAGGTGGTACAACCACATTGATGCTTTGTTGAGAATTTCTGGTGTTTCTGGTGAGGGATCTGGTGTCACTGTGGAGGGATCTGCTCTTGTCGCAGAGGAGGCTATTGCTACTCCTCCTGCTGCTGACACAAAGGCTTCCGCTGCTGAGGATGACGAGGACGATGATGATGTGGATTTGTTTGGTGAGGAGACCGAGGAAGAAAAGAAGGCAGCTGAGGAACGTGCTGCTGCCGTGAAGGCATCGGGAAAGAAGAAAGAGTCTGGAAAATCATCTGTTCTGTTGGATGTGAAGCCATGGGATGATGAAACCGACATGAAAAAGCTTGAAGAAGCTGTGAGAAGTGTTCAGCAAGAAGGACTTTTTTGGGGTGCATCCAAACTTGTTGCTGTTGGTTATGGTATCAAGAAGCTTCAAATTATGCTTACTATTGTGGATGACCTTGTCTCTGTTGACACTCTCATTGAGGAAACTCTTACAGTTGAGCCCATCAATGAATATGTCCAGAGCTGTGACATTGTGGCCTTCAACAAAATATAA	702	0.4558	MAVILYSPTSESGLQKLDEYLLTRSYISGYQASKDDLTVYALLSGVPSDKYVNVSRWYNHIDALLRISGVSGEGSGVTVEGSALVAEEAIATPPAADTKASAAEDDEDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQQEGLFWGASKLVAVGYGIKKLQIMLTIVDDLVSVDTLIEETLTVEPINEYVQSCDIVAFNKI*	234

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan15g0445	233	CDD	EF1B	142	233	IPR014038	GO:0003746\|GO:0006414
	Lan15g0445	233	Gene3D	-	137	233	IPR014717	-
	Lan15g0445	233	PANTHER	EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER	1	233	-	-
	Lan15g0445	233	SMART	EF1_GNE_2	144	233	IPR014038	GO:0003746\|GO:0006414
	Lan15g0445	233	Pfam	EF-1 guanine nucleotide exchange domain	146	233	IPR014038	GO:0003746\|GO:0006414
	Lan15g0445	233	Coils	Coil	116	136	-	-
	Lan15g0445	233	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 1.	108	116	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Lan15g0445	233	SUPERFAMILY	GST C-terminal domain-like	10	67	IPR036282	-
	Lan15g0445	233	Gene3D	-	3	78	-	-
	Lan15g0445	233	SUPERFAMILY	eEF-1beta-like	141	233	IPR036219	-
	Lan15g0445	233	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 2.	222	233	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Lan15g0445	233	PANTHER	RIPENING REGULATED PROTEIN DDTFR10-LIKE	1	233	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan15g0445	Lan-Chr15	10277807	10279907	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan15g0445	9	233	Eukaryotic Initiation Factors Gene Family	AT2G18110	80.444	2.52e-115	327

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan15g0445	K03232		-	pvy:116120737	312.383