Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0394 ATGGACTTCACCAAGAAGCGCAAAACTGAAGAAAACGGCGACGCCGCCGAATCTCCGCCACAATCACTATCCACTGTCGCCGCAGCCCTAACCTCCGACGACATCCTCAAAATCCTCCAGCCCTTCACCCAAGACCAGCTCCTCGACCTCCTCCAGTCAGCCTCCCTCCGCCACCCCGACGTCCTCGACTCCGTCCGCACCCTCGCCGACCGCGACCCCGCCCTCCGCAAACTCTTCGTCCGCGGCCTCTCCGGTGACACCACCACTGACAACCTCCGCGCTGTATTCTCCGCTTATGGCGAACTCGACGAGGCCATTGTCATCATGGATAAGAACACCGGAAAGTCCAAGGGCTACGGTTTCGTCACGTTCAAGCACGTCGACGGCGCCATTATCGCTCTCAAGGAGCCTAGCAAGAAAATTGACGGAAGGATAACGGTTACTCAGCTTGCGGCTGCTTCGGGGACCGCGGCTGCAACCGATGTTTCCGCGAGGAAAGTGTTTGTGGGGAATGTTCCGTTTGATATATCGTCGGAGAGATTGTTGGAACACTTTCTTAGTTTTGGGGAAATTGAAGAAGGGCCGTTAGGGTTTGACAAAGCGAGCGGGAAGACTCGAGGGTTTGCTTTCTTCGTTTACAAGACCGAAGAAGGTGCAAGAGCTTCACTGGCGGAGCCTGCCAAAACCATTGACGGGCATCAGGTGATTTGCAAATTGGCTGTGGATAACAAGAAGGCAAAACCTGGAGGAGTTCCAGGCCAGACACTGCCTTCAGGGTTTGCAGGGAATGGCATGGCTTTTCAGCAGCAACAGCAGCAACCAATGCAGGCTCCTATGCTGGTATCACAGTATGGTGGATATGTTGGTGGTGGGAATGCTAATAATTATGGGGTTCAGTCTTCAGTGCCTTCATTTGGTAATCCTATACCGGCTAGCGGTGGTGGGTATGGGCATGGAGTTGGCAGTGCTTATGGTAATCCACAATTTGGTGGGCCAGTTTCCAGTGACTATGGCACAAGGTTCCCTCCCAATTCTGCTGGAGCACCTTCTGGGGGATTTCCAGATGGATCACATTACGGTCTTCCTCCAAATTCACAGAATCCACAGCCCATGCCGATGCCAAGACCTCCTCCTGGAGGAATCTACCAAGGAGTGCCACCTTATTATTGA 1170 0.5368 MDFTKKRKTEENGDAAESPPQSLSTVAAALTSDDILKILQPFTQDQLLDLLQSASLRHPDVLDSVRTLADRDPALRKLFVRGLSGDTTTDNLRAVFSAYGELDEAIVIMDKNTGKSKGYGFVTFKHVDGAIIALKEPSKKIDGRITVTQLAAASGTAAATDVSARKVFVGNVPFDISSERLLEHFLSFGEIEEGPLGFDKASGKTRGFAFFVYKTEEGARASLAEPAKTIDGHQVICKLAVDNKKAKPGGVPGQTLPSGFAGNGMAFQQQQQQPMQAPMLVSQYGGYVGGGNANNYGVQSSVPSFGNPIPASGGGYGHGVGSAYGNPQFGGPVSSDYGTRFPPNSAGAPSGGFPDGSHYGLPPNSQNPQPMPMPRPPPGGIYQGVPPYY* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0394 389 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 247 IPR000504 GO:0003723
Lan15g0394 389 SUPERFAMILY RNA-binding domain, RBD 160 254 IPR035979 GO:0003676
Lan15g0394 389 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 357 - -
Lan15g0394 389 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 234 IPR000504 GO:0003723
Lan15g0394 389 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 78 144 IPR000504 GO:0003723
Lan15g0394 389 MobiDBLite consensus disorder prediction 1 23 - -
Lan15g0394 389 Gene3D - 4 157 IPR012677 -
Lan15g0394 389 SMART rrm1_1 77 149 IPR000504 GO:0003723
Lan15g0394 389 SMART rrm1_1 166 238 IPR000504 GO:0003723
Lan15g0394 389 MobiDBLite consensus disorder prediction 365 389 - -
Lan15g0394 389 MobiDBLite consensus disorder prediction 334 389 - -
Lan15g0394 389 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 76 153 IPR000504 GO:0003723
Lan15g0394 389 SUPERFAMILY RNA-binding domain, RBD 68 150 IPR035979 GO:0003676
Lan15g0394 389 PANTHER GEO13361P1-RELATED 1 357 - -
Lan15g0394 389 CDD RRM_RBM24_RBM38_like 76 150 - -
Lan15g0394 389 Gene3D - 158 274 IPR012677 -
Lan15g0394 389 CDD RRM_RBM24_RBM38_like 165 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0394 Lan-Chr15 7541880 7546452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0394 148 356 C2H2 Transcription Factor Family AT2G19380 27.984 2.12e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0394 K12741 - gmx:100804230 439.884