Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0329 ATGGCAATTTCTTCAGCTTCTTCTAAACTCATTTACTCACTTTCCCCTTCTTCCCCTTCTTACCCCTCCAATTCCCCCTCCTCTTTCCTCACCACCAACCCCAAACTAACCCCTCTCTCCTCCTCCCTCAAACCCTCCACAATCCTCCACCTCTCCCCCTCCACCGCCACCACCCGCCACCGCTCCTTCACAATCCGCGCCGCCAGGGGCAAATTCGAGCGCAAGAAACCCCACGTCAATATCGGTACCATAGGCCACGTTGACCACGGCAAGACCACGCTCACTGCTGCCCTCACCATGGCCCTGGCTGCCAATGGCAACAGCACGCCGAAGAAGTACGACGAGATAGATGCTGCCCCTGAGGAGCGTGCACGTGGCATTACAATTAACACGGCGACGGTGGAGTATGAGACTGAGAATCGGCATTATGCCCATGTGGATTGCCCTGGGCATGCTGATTATGTGAAGAATATGATTACTGGTGCTGCGCAGATGGACGGCGCGATACTCGTTGTTTCAGGTGCTGATGGGCCAATGCCACAGACTAAAGAGCATATCCTTCTTGCTAAGCAAGTTGGAGTTCCTAATATGGTGGTGTTCCTTAATAAGCAGGACCAGGTTGATGATGAGGAGCTTCTCGAGTTAGTTGAACTTGAGGTTCGTGACCTTCTCTCCTCTTATGAGTTCCCTGGTGATGATATTCCCATTGTTTCTGGTTCAGCTCTCTTGGCTTTGGAAGCTTTGATGGCGAATCCTGCAATCAAGCGTGGAGATAATCAATGGGTGGACAAGATTTATGAGCTAATGGATAATGTGGATAGCTACATACCTATTCCTGTGCGCCAAACCGATCTTCCGTTTTTGCTTGCTATTGAAGATGTGTTTTCCATCACTGGTCGTGGGACTGTGGCCACAGGTCGTGTTGAGAGGGGTACCATTAAGGTAGGAGACACTGTAGATCTTGTTGGTTTGAGGGAAACCAGGAGTACTACTGTGACCGGTGTGGAAATGTTCCAAAAGATTCTGGATGATGCCATGGCTGGGGATAATGTCGGGTTGTTGCTCAGGGGTATTCAGAAGATTGATATTCAGAGAGGGATGGTTTTGGCTAAGCCTGGTACTATTACACCGCATACTAAGTTTTCTGCCATTGTCTATGTTTTGAAGAAGGAAGAAGGAGGGAGGCACTCCCCTTTCTTTGCAGGTTACAGGCCGCAATTCTACATGAGGACCACCGATGTCACCGGAAGAGTTGCTTCCATTATGAATGACAAGGATGAGGAGTCGAAGATGGTTATGCCCGGAGACCGGGTCAAGATGGTGGTTGAACTTATAATGCCTGTGGCTTGTGAACAGGGAATGAGGTTCGCTATTAGAGAAGGAGGGAAGACTGTTGGAGCTGGCGTTATTCAATCTATCCTTGAGTGA 1428 0.4965 MAISSASSKLIYSLSPSSPSYPSNSPSSFLTTNPKLTPLSSSLKPSTILHLSPSTATTRHRSFTIRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALAANGNSTPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRDLLSSYEFPGDDIPIVSGSALLALEALMANPAIKRGDNQWVDKIYELMDNVDSYIPIPVRQTDLPFLLAIEDVFSITGRGTVATGRVERGTIKVGDTVDLVGLRETRSTTVTGVEMFQKILDDAMAGDNVGLLLRGIQKIDIQRGMVLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVASIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSILE* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0329 475 TIGRFAM small_GTP: small GTP-binding protein domain 79 212 IPR005225 GO:0005525
Lan15g0329 475 Gene3D Translation factors 414 474 - -
Lan15g0329 475 PANTHER ELONGATION FACTOR TU-RELATED 23 475 - -
Lan15g0329 475 CDD EF_Tu 77 279 IPR041709 -
Lan15g0329 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 302 IPR027417 -
Lan15g0329 475 Gene3D Translation factors 282 410 - -
Lan15g0329 475 PANTHER ELONGATION FACTOR TU 23 475 - -
Lan15g0329 475 PRINTS GTP-binding elongation factor signature 80 93 IPR000795 GO:0003924|GO:0005525
Lan15g0329 475 PRINTS GTP-binding elongation factor signature 124 132 IPR000795 GO:0003924|GO:0005525
Lan15g0329 475 PRINTS GTP-binding elongation factor signature 144 154 IPR000795 GO:0003924|GO:0005525
Lan15g0329 475 PRINTS GTP-binding elongation factor signature 160 171 IPR000795 GO:0003924|GO:0005525
Lan15g0329 475 PRINTS GTP-binding elongation factor signature 197 206 IPR000795 GO:0003924|GO:0005525
Lan15g0329 475 Pfam Elongation factor Tu domain 2 301 369 IPR004161 GO:0005525
Lan15g0329 475 CDD EFTU_II 287 373 IPR033720 -
Lan15g0329 475 TIGRFAM EF-Tu: translation elongation factor Tu 68 475 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lan15g0329 475 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 76 280 IPR000795 GO:0003924|GO:0005525
Lan15g0329 475 CDD EFTU_III 376 470 - -
Lan15g0329 475 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 117 132 IPR031157 -
Lan15g0329 475 Pfam Elongation factor Tu C-terminal domain 374 473 IPR004160 -
Lan15g0329 475 Gene3D - 68 279 IPR027417 -
Lan15g0329 475 Hamap Elongation factor Tu [tuf]. 67 475 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lan15g0329 475 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 374 474 IPR009001 -
Lan15g0329 475 Pfam Elongation factor Tu GTP binding domain 76 277 IPR000795 GO:0003924|GO:0005525
Lan15g0329 475 SUPERFAMILY Translation proteins 281 377 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0329 Lan-Chr15 5096558 5098897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0329 74 473 Eukaryotic Initiation Factors Gene Family AT5G60390 30.872 2.47e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0329 K02358 - qsu:112012250 785.793