Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0301 ATGGGTCGAGCTCCATGCTGTGACAAGGCCAACATGAAGAAGGGACCTTGGTCTCCAGAAGAGGATGCCAAACTAAAAGCCTATATGGATAAAAATGGAGCTGGAGGAAATTGGCTTGCTCTTCCACATAAAATTGGGATGAAGAGATGTGGAAAGAGTTGCAGACTAAGATGGTTAAATTACTTGAGGCCTAATATCAAGCACGGTGGATTTACTGAAGAAGAAGACAATACCATATGCAGCCTTTACATTAGCATTGGCACTAGATGGTCCATTATTGCAGCACAATTACCTGGAAGAACTGATAATGATATCAAGAACTACTGGAATACCAAATTGAAGAAGAAATTGCTAGGCAGGTTCAAACAATCTAACCAAAACCCAAAAGACATGAACCAAATAGAAGACAACTCATATTCAAATGCCCTAAGCAACTCCAGTTTAGAACGACTTCAACTGCATATGCAACTACAAAGCCCTTTCTCTTTCTATAACAATCCTACATTGTGCCCTAAGTTACATCCTTTCCAAGAAAAAATGACCCAAAGAACTATGAGTGGTAGCTTTAACCCTATGGTGCAAAATGATTTACCCTCCCCTCATACCAAGCAAGAAAAAGATGAGTTCTACAAACCAACTTCTCCTGGTGATGCACTTCAAGAAGATGGTTCAAAAGTTAATCTTGTAGAGAATTATTATAATTACAGTTCAGTTCTCATCAATGCCTCTTGGAATAATCCAATGAACTCAAGCTTTGTGCCAAAAAAAGAGGAGGGTGAAAAGAATAATGAAGGAATTCAGCAAGTTTGTGCATTGCAAGATGAACTAGATGACATTCTGAATGACAAAACAATGGGATACAAATCACATGAAGATCAGATAAGTGAATTTGATTGTTTTAGAGAGATGAATAGTTCAAATGACAACTTGATTTGGTGGTATAATGATTTTGAAGCCAAATCATCAGCATCGTCAAACTCTTGGGGATTTATCAACGGATCCAATTCTTCTGTCTAA 1017 0.3786 MGRAPCCDKANMKKGPWSPEEDAKLKAYMDKNGAGGNWLALPHKIGMKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNTICSLYISIGTRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLGRFKQSNQNPKDMNQIEDNSYSNALSNSSLERLQLHMQLQSPFSFYNNPTLCPKLHPFQEKMTQRTMSGSFNPMVQNDLPSPHTKQEKDEFYKPTSPGDALQEDGSKVNLVENYYNYSSVLINASWNNPMNSSFVPKKEEGEKNNEGIQQVCALQDELDDILNDKTMGYKSHEDQISEFDCFREMNSSNDNLIWWYNDFEAKSSASSNSWGFINGSNSSV* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0301 338 CDD SANT 71 113 IPR001005 -
Lan15g0301 338 Gene3D - 69 143 - -
Lan15g0301 338 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lan15g0301 338 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lan15g0301 338 CDD SANT 16 62 IPR001005 -
Lan15g0301 338 SMART sant 13 64 IPR001005 -
Lan15g0301 338 SMART sant 67 115 IPR001005 -
Lan15g0301 338 MobiDBLite consensus disorder prediction 197 222 - -
Lan15g0301 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lan15g0301 338 PANTHER OS09G0431300 PROTEIN 1 319 - -
Lan15g0301 338 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lan15g0301 338 Gene3D - 7 68 - -
Lan15g0301 338 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lan15g0301 338 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lan15g0301 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lan15g0301 338 PANTHER OS09G0431300 PROTEIN 1 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0301 Lan-Chr15 3978957 3981183 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0301 1 181 MYB Transcription Factor Family AT5G57620 74.479 8.36e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan15g0301 Myb_DNA-binding 5.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0301 K09422 - gmx:778083 440.269