Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0278 ATGCAACCCATTAGCAGAGAAATGCAAGGAATCAATTCCCTTATAAACTCTTCACAACTTTCACTCCAAGACCTTAACAACCAGATCCAAAACCCTCTCATGAACAATAACCACAACCAACAACTCAATCCTTTTGACCCCACTTCCCATGACGATTTCCTCCAACAAATGCTCTCTAACCTTGATTCTTCTTCTTCTTGGTTAGACCCAAACAACAACATTAACAACAAACCCATGTTGTGGGACCAAAAGCATGAGGAAACAACGTTGTCTAACGTTGAAAATAATGTTGTTGGCTTTGCTTATGATGAACACGTTGGCTTGGCCTCTAAGCTCCGTAACCACCAGATTACTGCTACATCTCCGACGAACAAGGCGGCTACGGCGGCTCTTTTGCTCCACCACCAATTTCTCATGGCTAGAGGCGTTGCCGGAGATTCAGGGATACTCCAGATGCCGCTTTCGTTGGGTGGAAACGACGTCGTTGATGGGTCATCTTTCAAATCTCATAATCTGAGTGGTGAGGATTCTCTTCAAGCTATGCACAACGGTTTAGCTGGATCTTTGCATGGAACCGTTCAAGCTTCAAACCAGACTCAACATTTTCAACCTCCTCAGGGTGCAACGAATAATCAAGCCACTCCATCAAGTGGTGCGGTAGGTGGAATACAGGGTCAGCCTAGGCAAAGGGTTCGAGCCAGAAGAGGTCAAGCCACGGACCCACACAGCATTGCTGAAAGATTACGAAGGGAGAGAATTGCAGAGAGAATGAAGGCACTGCAGGAACTGGTTCCTAATGCCAATAAGACAGACAAAGCATCCATGCTGGATGAGATCATCGATTACGTGAAGTTTCTACAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGATTGGGCGGTGCAGCTTCTGCCACACCCCTTGCTGCTGATATGCCCTCTCAGGGAGGCGGTGACTGCATACAAGCAAACGGCAGTGGCGCCCTCCAACGGTTTACTAACGGCAACCAAACGGCAGCGTCAACCTCCAACAACGAAAGCCTCACCATGTCGGAGCACCAAGTGGCCAAGCTCATGGAGGAGGACATGGGCTCCGCCATGCAGTACCTCCAAGGCAAGGGCCTTTGCCTCATGCCCATATCTCTCGCCACCGCCATCTCCACGTGTCACACCAGGAACAACAATCACCACTTGACTAACGGCGTTCCCAATCATAACGGCAGTGCCGGCGCCAACTTAAACCTAACTAACGGCGAAGGGCCGTCATCTTCTAACGTGTCCGTTACAACGGTGCAGTCAGGTGTCGTGGCAAACGTTAACGCCGTCAAAGACTCTGCCTCCGTTTCGAAGCCGTGA 1353 0.4974 MQPISREMQGINSLINSSQLSLQDLNNQIQNPLMNNNHNQQLNPFDPTSHDDFLQQMLSNLDSSSSWLDPNNNINNKPMLWDQKHEETTLSNVENNVVGFAYDEHVGLASKLRNHQITATSPTNKAATAALLLHHQFLMARGVAGDSGILQMPLSLGGNDVVDGSSFKSHNLSGEDSLQAMHNGLAGSLHGTVQASNQTQHFQPPQGATNNQATPSSGAVGGIQGQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAASATPLAADMPSQGGGDCIQANGSGALQRFTNGNQTAASTSNNESLTMSEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTCHTRNNNHHLTNGVPNHNGSAGANLNLTNGEGPSSSNVSVTTVQSGVVANVNAVKDSASVSKP* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0278 450 Pfam Helix-loop-helix DNA-binding domain 242 287 IPR011598 GO:0046983
Lan15g0278 450 MobiDBLite consensus disorder prediction 199 242 - -
Lan15g0278 450 Gene3D - 232 294 IPR036638 GO:0046983
Lan15g0278 450 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 237 286 IPR011598 GO:0046983
Lan15g0278 450 MobiDBLite consensus disorder prediction 199 223 - -
Lan15g0278 450 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 41 398 - -
Lan15g0278 450 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 235 296 IPR036638 GO:0046983
Lan15g0278 450 SMART finulus 243 292 IPR011598 GO:0046983
Lan15g0278 450 PANTHER TRANSCRIPTION FACTOR BHLH69 41 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0278 Lan-Chr15 3332323 3338378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0278 216 449 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 58.984 1.54e-80 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan15g0278 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0278 - - gmx:100807286 462.996