Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0272 ATGGCTGTGGAGAATCAAAGGGGTCCTGTGGTGGATGAAGAAGGGGCTAGTGACCCTTTTCCTGTAGGTATGCGTGTCCTTGCTGTGGATGATGAACCAATTTGCCTCAGAGTTTTGGAGACCCTCCTACGCAAATGCCAGTACCATGTTACGACAACTAATCAGGCGATTGAGGCGCTGAGAATGTTGAGGGAAAACAGAAATAACTTTGACCTTGTCATCAGTGATGTGAATATGCCAGATATTGATGGGTTTAAGCTCCTTGAGTTGGTGGGACTTGAAATGGACTTACCTGTTATCATGTTGTCAGCACACAGTGATACAAAGCTGGTGATGAAGGGTGTTGCACATGGTGCATGTGACTATTTGCTGAAACCGGTTCGACTCGAGGAGCTGAAGAACATATGGCAACATGTCGTGCGAAAGAAAAAAACTGATAGCGGGGATAAGCCTTCCAAAGAGGAGAAGGGTCCTAATATTGCTGGGGAAGGTAGTCAAGGCATCTTATCAGAAAGCAGTGCTGATCAAAATAAAGCTCTTGGTAAGAGAAGAAAGGACCAAAGTGAGGATGAAGAAGAAGACCCTGATGCAGATGAAGAAGAGACTGAGGATCCCTCAGCGCAGAAAAGGCCTCGTGTAGTTTGGTCAGTTGAGCTGCATAGAAAATTTGTTGGGGCAGTTAACCAACTTGGCCTTGAAAAGGCTGTTCCAAAGAAAATACTTGACATGATGAATGTTGAAGGGCTTACAAGGGAAAACGTGGCAAGCCATCTGCAGAAATATCGACTCTATCTGAAAAAGGCAACCCAGCAAGCTAGTATGGTTGCTGTATTTGGTGGTAGTGATTCTTACATGCGGATGGGTTCAATAGATGGATATGGAGATTTTTGTGCTTCATCTGGATCAGGAAGGTTGTCAACCGCTACATTACCATCTTATGCATCAAGTGGAATTTTCGGTAGGCTGAATTCCCCGGCTGGCTTGAACATGAGAGGAATTAGTTCTTCTGCACTAATCAGTCCTGTCCAATCTCAAAACATTAGCAGCTCATTCAACACAGTTGGAAATATTCAGCCATCCATATTTCCTGCAAATCATAGCTCAAGTTTATTTCACGGCATTCCAACATCAATCGAGCTTACACCGGCCAAACAAAGCAACTGTACAACTGGTTTAACACAGTTAAGTCAAGTTGATCAAAGTGGATTCACAGCTGCTTCCGGCTTCCCAGATAGTAGGGTTACTGTTGGTAATGCTAACAATTCTATACCTTGTGTCTCAAATAATCATTTGATGTTACAAGGGAACTCGCAACAAACCCATTCAGGAGCATTTAGAAATCAGTCTTCTGTTAGAGCAGCTCCTCTGGGCACAGAATCTTTTGATGTCGGCATGTGCAGTTCTTCGAATATGCTGGACTATAATCGTTCTAATGAGAACTGGCCGAGTGCAGCTCAGTTGCCTAAATTTCCTGCCAATTCTTTGCCATTTTGTGAGACTTTCAATAATGACCAACTGCCTCTCACCGGCATGAATGTTTCCAACTCAAGTACTCTTATCGGTAACAGTCCAGTGGATTTCTCGTCCAGAATTGCAATTTCTGTACCTTTGGAGGATTCTCGAAGTGAGCTGCAATGTCAAGAAGACTTGACCAGGAATATTTTACAGCCTTCAAGTTATACACCACGACAAAGATGGGATGAACATAGACTGGACTATAACGAAAACATGAGCCGTCCCTTCAATTCTGTAAATTCACTGGTTTCTTCTAGTGGAGTGATGAACACTCTGGGGAACAGTTTTAACCAAAATAGTACAACTTGCGGCAATAGAATTGATGCATCTTTGTGTGGCCAACTGAATGGGGCTTCCCCATCAATGCCTCAGTGCAACGAGGTTGAGAAACTTTCTTCGGGCATAAGATTCAAGCCAAATGATGCCTACATTTTGGAGCAAATGAAGTCCCAGGATGGATTTATTCATAATAACTATGGGACCTTGGATGAGATCATGGGTGCAATGGTCAAAAGGGAGCAACATGATTTGATATTGATGAATGGAGAAATGGGATTTGATGCCTACCCTGTGGGTTCATGTATCTGA 2103 0.4332 MAVENQRGPVVDEEGASDPFPVGMRVLAVDDEPICLRVLETLLRKCQYHVTTTNQAIEALRMLRENRNNFDLVISDVNMPDIDGFKLLELVGLEMDLPVIMLSAHSDTKLVMKGVAHGACDYLLKPVRLEELKNIWQHVVRKKKTDSGDKPSKEEKGPNIAGEGSQGILSESSADQNKALGKRRKDQSEDEEEDPDADEEETEDPSAQKRPRVVWSVELHRKFVGAVNQLGLEKAVPKKILDMMNVEGLTRENVASHLQKYRLYLKKATQQASMVAVFGGSDSYMRMGSIDGYGDFCASSGSGRLSTATLPSYASSGIFGRLNSPAGLNMRGISSSALISPVQSQNISSSFNTVGNIQPSIFPANHSSSLFHGIPTSIELTPAKQSNCTTGLTQLSQVDQSGFTAASGFPDSRVTVGNANNSIPCVSNNHLMLQGNSQQTHSGAFRNQSSVRAAPLGTESFDVGMCSSSNMLDYNRSNENWPSAAQLPKFPANSLPFCETFNNDQLPLTGMNVSNSSTLIGNSPVDFSSRIAISVPLEDSRSELQCQEDLTRNILQPSSYTPRQRWDEHRLDYNENMSRPFNSVNSLVSSSGVMNTLGNSFNQNSTTCGNRIDASLCGQLNGASPSMPQCNEVEKLSSGIRFKPNDAYILEQMKSQDGFIHNNYGTLDEIMGAMVKREQHDLILMNGEMGFDAYPVGSCI* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0272 700 MobiDBLite consensus disorder prediction 140 210 - -
Lan15g0272 700 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 681 IPR045279 GO:0009736
Lan15g0272 700 Pfam Myb-like DNA-binding domain 212 262 IPR001005 -
Lan15g0272 700 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 211 263 IPR006447 GO:0003677
Lan15g0272 700 PIRSF RR_ARR_type-B 1 700 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lan15g0272 700 Gene3D - 23 157 - -
Lan15g0272 700 SUPERFAMILY Homeodomain-like 208 267 IPR009057 -
Lan15g0272 700 MobiDBLite consensus disorder prediction 140 157 - -
Lan15g0272 700 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 681 - -
Lan15g0272 700 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Lan15g0272 700 Gene3D - 206 268 - -
Lan15g0272 700 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 207 266 IPR017930 -
Lan15g0272 700 SMART REC_2 24 136 IPR001789 GO:0000160
Lan15g0272 700 SUPERFAMILY CheY-like 23 144 IPR011006 -
Lan15g0272 700 CDD REC_typeB_ARR-like 26 140 - -
Lan15g0272 700 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0272 Lan-Chr15 3143776 3148607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0272 16 443 Response Regulator Gene Family AT2G25180 50.455 2.17e-123 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lan15g0272 Response_reg 2.2e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0272 K14491 - gmx:100776075 1058.9