Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0258 ATGGGACGCGTAAAGATTGAGATCAAGAGGATCGAGAACAACACAACAAGGCAAGTTACCTTCTCAAAACGAAGAACCGGTATTCTGAAAAAGACTCATGAGCTTTCTGTTCTCTGTGACGCTCAAATCGGACTCATCATCTTCTCTAGTAATGGAAAAATGTATCAGTATTGCACTGAACCGTTTAGGATGGAGCAGATCATTGCAAAGTATCAGAGAGCAACAGGAACTCACATAATGCAACAAGATCATCACTTGCGGGAAGATATATTGAAAGAATTGGGAATGCTGAGGCAGGAAACTCTTCGTCTTGAATTGGGAATTCAACGCTATCTTGGAGAGGACATAAGTTGTTTACAGTATGAAGATTTGACTAAACTTGAAGAAGAATTGGAGAACTCTATGGCAAAGGTTCGAGATCGTCAGAATGAGCTCTTGCAACAGCAAATGGATAATCTGCGAAGGAAGGAGAGAATTTTGGAAGATGAACACAGCAATTTATCCAATTGGGTAAGTTTTTTTTTATCAACATTGGAATTTGAGCAGGTTGCAGTAGAAGGAAATAAACCAATGCAGCAGCATGAACAGCAAGTAATGGATTACTTCCCATTCTTTGAAGACCAACCTGCTGATACTTTGCTTCAACTTGCTGCTCCTGTTCTTCCACACTTTCACCCATATCTTCACCTAGCTCAGCCTAATTTTCAACACTCCCAGGAGCCATGA 726 0.4063 MGRVKIEIKRIENNTTRQVTFSKRRTGILKKTHELSVLCDAQIGLIIFSSNGKMYQYCTEPFRMEQIIAKYQRATGTHIMQQDHHLREDILKELGMLRQETLRLELGIQRYLGEDISCLQYEDLTKLEEELENSMAKVRDRQNELLQQQMDNLRRKERILEDEHSNLSNWVSFFLSTLEFEQVAVEGNKPMQQHEQQVMDYFPFFEDQPADTLLQLAAPVLPHFHPYLHLAQPNFQHSQEP* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0258 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lan15g0258 241 Coils Coil 121 163 - -
Lan15g0258 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 236 - -
Lan15g0258 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lan15g0258 241 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Lan15g0258 241 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Lan15g0258 241 Pfam K-box region 83 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan15g0258 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan15g0258 241 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lan15g0258 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lan15g0258 241 ProSiteProfiles K-box domain profile. 87 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan15g0258 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan15g0258 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan15g0258 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan15g0258 241 PANTHER PROTEIN TRANSPARENT TESTA 16-LIKE ISOFORM X1 1 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0258 Lan-Chr15 2969547 2974371 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0258 1 237 MADS-box Gene Family AT5G23260 44.400 4.30e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan15g0258 K-box 2.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0258 - - gmx:102667157 315.079