Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan15g0257 | ATGGCTGGAATGCTTCCAGGAGTTGAATCTGCTAGAAGAAGAAGGTTCCATCATAGTGGAGGATGTTTAGATTCACCTTCTTTGTCTCCTCATAATTCTACAAGGCGCTCTTCTTTTTGTTTATATGCAAAAAACAATGAATCACTTCTTCCTTCATTTTCTTCATTGCAAAGAAGCATGTTTAACCAGACACACCCAGATGAAAATATAGTAGGAGCAGCTAGAGAAGCTAAACAAAGATTGGATGAGAAGTTCAAACAACAAAGGAAATCAGAAAACAAAAGGCAAAACACTTATATAAAGGGAAGAAGGACAAGTCCAGAAGAGTTAGAGAATTATGGGTCAAAGAAAAGTGGTTTAAGGAAATTCTATTGGACCAAATTGAGCTTGAAGGCCTTAGAACAAGAAGATTGTGCTGTATGCTTGGAATCACTGAAGGGTGGAGAGACACTGACCCATCTCCATTGTGAACATAGGTTCCATTCTAGATGCTTGAAACCATGGTTAGATCAAAATTCTTGTCCATGTTGCAGAACTACCATTATTCCCCCTTAG | 555 | 0.3838 | MAGMLPGVESARRRRFHHSGGCLDSPSLSPHNSTRRSSFCLYAKNNESLLPSFSSLQRSMFNQTHPDENIVGAAREAKQRLDEKFKQQRKSENKRQNTYIKGRRTSPEELENYGSKKSGLRKFYWTKLSLKALEQEDCAVCLESLKGGETLTHLHCEHRFHSRCLKPWLDQNSCPCCRTTIIPP* | 185 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan15g0257 | 184 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 117 | 183 | IPR013083 | - | |
| Lan15g0257 | 184 | SUPERFAMILY | RING/U-box | 127 | 183 | - | - | |
| Lan15g0257 | 184 | MobiDBLite | consensus disorder prediction | 83 | 113 | - | - | |
| Lan15g0257 | 184 | Pfam | Ring finger domain | 137 | 178 | IPR001841 | - | |
| Lan15g0257 | 184 | ProSiteProfiles | Zinc finger RING-type profile. | 138 | 178 | IPR001841 | - | |
| Lan15g0257 | 184 | Coils | Coil | 74 | 94 | - | - | |
| Lan15g0257 | 184 | PANTHER | RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING | 1 | 94 | - | - | |
| Lan15g0257 | 184 | PANTHER | RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING | 115 | 180 | - | - | |
| Lan15g0257 | 184 | SMART | ring_2 | 138 | 177 | IPR001841 | - | |
| Lan15g0257 | 184 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 94 | - | - | |
| Lan15g0257 | 184 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 115 | 180 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan15g0257 | Lan-Chr15 | 2918983 | 2920266 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan15g0257 | 1 | 86 | C3H Transcription Factor Family | AT2G15580 | 45.263 | 1.09e-16 | 70.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan15g0257 | - | - | gmx:100527583 | 237.654 |