Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0255 ATGTGTGTGCAAGAGGCAGAACAAGTTGCTCAAGAAATTGAGAACATGGATAATAGAAGAAGACCATCATGGCCTTTGCATTGTGAACTTTTACATACCCAGATGGAGAACTTTGATAAAACATCTTCTTTGAGAACTTCAACTGTTGAAAACTCATGTCCTCTTGAAAGCATAAGTGAGGATACAATGATTACAGACAAGAAACAGATCCTGGTGAGCTTCGTCCCAGCTCTTCGGTCAGGAGAGTGGTCCGATATTGGAGAACGCCCTTACATGGAGGATACTCACATATGCATTGGCGATTTGGCAAACAAGTTTAGCAATAACATGCACTCTGAGGAAGCGGTTTCCTTTTATGGTGTATTTGATGGACATGGAGGGAAGAGTGCAGCTCAATTTGTCCGTGATTATCTGCCGACAGTGATTGTTGAGGATGCAAACTTTCCTCTAGAGCTTGAAAAGGCAGTCACAAGGTCATTTTTGGTGACTGATGCAGCATTCGCAAAAAGATCATCTCTCGAGTCTTCTCTATCTTCTGGTACAACTGCACTAACTGCAATTATATTTGGAAGGTCCTTACTAGTAGCCAATGCTGGAGACTGTCGGGCTGTCTTGTCCCGTTGTGGAAGGGCTATAGAAATGTCCAAAGATCATAGGCCAACTTGCAGCAAAGAAAGGATGCGGATCGAGTCCCTAGGTGGATTTGTTGATGATGGTTACCTGAATGGCCAGTTAGGTGTTAGTCGCGCTATAGGTGACTGGCACCTTGATGGAATGAAGGAAACGAGTGAAAGAGGTGGACCACTGAGTGCCGAACCTGAACTTAAATTAACGACATTGACCAAAGAAGATGAATTCTTGATAATCGGTAGCGATGGAATCTGGGATGTTTTCAGTAGCCAAAATGCTGTAGATTTTGCAAGAAGGAGGCTTCAAGAGCATAATAATGAGAAACTATGCTGCAAGGAAATAGTACATGAAGCAAAGAAGAGAGGATCAACAGATAACTTAACTCTTGTGATGGTATGTTTTAACTCAGATCCACCACCACCTATGATTGTAGAAAGAACAAGAGTCAGAAGAAGCATATCTGCTGAGGGACTTCTGAATCTTAGATCCTTGCTTGAAGAATAG 1134 0.425 MCVQEAEQVAQEIENMDNRRRPSWPLHCELLHTQMENFDKTSSLRTSTVENSCPLESISEDTMITDKKQILVSFVPALRSGEWSDIGERPYMEDTHICIGDLANKFSNNMHSEEAVSFYGVFDGHGGKSAAQFVRDYLPTVIVEDANFPLELEKAVTRSFLVTDAAFAKRSSLESSLSSGTTALTAIIFGRSLLVANAGDCRAVLSRCGRAIEMSKDHRPTCSKERMRIESLGGFVDDGYLNGQLGVSRAIGDWHLDGMKETSERGGPLSAEPELKLTTLTKEDEFLIIGSDGIWDVFSSQNAVDFARRRLQEHNNEKLCCKEIVHEAKKRGSTDNLTLVMVCFNSDPPPPMIVERTRVRRSISAEGLLNLRSLLEE* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0255 377 Pfam Protein phosphatase 2C 91 336 IPR001932 -
Lan15g0255 377 SMART PP2C_4 69 342 IPR001932 -
Lan15g0255 377 ProSiteProfiles PPM-type phosphatase domain profile. 79 344 IPR001932 -
Lan15g0255 377 SUPERFAMILY PP2C-like 69 346 IPR036457 -
Lan15g0255 377 ProSitePatterns PPM-type phosphatase domain signature. 118 126 IPR000222 GO:0043169
Lan15g0255 377 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 365 - -
Lan15g0255 377 Gene3D - 64 347 IPR036457 -
Lan15g0255 377 PANTHER PROTEIN PHOSPHATASE 2C 1 365 IPR015655 GO:0004722|GO:0006470
Lan15g0255 377 CDD PP2Cc 79 344 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0255 Lan-Chr15 2900310 2904208 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0255 36 376 PP2C-type Phosphatase Gene Family AT2G25620 56.125 1.50e-131 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Lan15g0255 PP2C 1.8e-68 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0255 K14803 - gmx:100813157 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1125 12 17634730 17637557 Lan15g0255 15 2900310 2904208 PCT
Lan1g0278 1 2045090 2055370 Lan15g0255 15 2900310 2904208 PCT
Lan15g0255 15 2900310 2904208 Lan12g1125 12 17634730 17637557 PCT
Lan15g0255 15 2900310 2904208 Lan1g0278 1 2045090 2055370 PCT