Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0248 ATGGGGAAGAAAAAGAAGCAAGTCGGAGAAAAAAGTGAAGATAGTGGAAATCAAAGCAAAGCTGGAGATAAAAGCCCGAAATCATATGACAATGATACTTTAGTATTTATATCCATGTCTCAAGAGTTAAAGGATGAGGGGAACAAGCTGTTTCAAAAGCGGGATGTTGAAGGAGCTTTGGTGAAATATGAAAAAGCTCTCAAATTGCTTCCGAGCAATCATATAGATGTGTCCTATCTTCGGAGTAACATGGCTGCGTGCTACATGCAGATGGGACTTAGCGAGTATCCGAGGGCAATTCATGAATGTAATTTGGCTCTTGAAGTAACACCGAAGTACAGTAAAGCTCTATTGAAGAGGGCAAGGTGCTATGATGCTTTAAATAGGCTAGATTTAGCACTGAGGGATGTTAGTACTGTTTTGAAGATGGAGCCAAATAATATAATGGCAACGGAGATCTCAGATAATGTCAAAAGGGCACTCGAAAAAAAAGGATTAATAGTAAACGATACAGAAATTGAGTTGCCTCCCGATTATGCTGAGCCTCCGTATGGTTTGTCTACCAAAGAAGTAGTGAAAGAAAAGATGCACAAGAAAAAAAGCAACAAAGAGAAAGTGAAGGCTCCTGATAAAATTGTAGAAAAGCAAGCTGAGGAGAAATCCGAAGAGAAGAAAACTGAGGACCGTATTGTTGCAAAGAAGGCAGAGGAAAGTATTGCAGAAAAGATGGCTGCGGACAACACTGTACAGAAGAAGGCTAAAAAATCAAAAAAGAAGGACAGGGAAATAATTGATGAGAAGAAGGATGATGTTAAGGAGGTTGTCGGTGAAAATAGTAATGGTAAAAGTGAAGTTATGCCTAAGAAAACAGCTAAACTTGTTTTTGGTGAGGATATAAGGTGTGTTGAATTGCCAGTCAACTGCACCCTGTTGCGGCTAAGAGAAGCTATTTGTGACCGGTTCCCAAATCTTGGAGCAGTTCTTGTCAAATACAAAGACCAAGAAGGTGACTTGGTCACAATCACTTGTGATGAAGAATTAAGGTGGGCTGAAACAGGATCACAGGGTTCTATCCGGCTGTACATAGTAGAAGCCAATCCTGATCAGGATCCATTCTTTGAGAAACTTAAAGTGAAGGATGGGAAAAATGTTGGCATTGTTAATGCTTCTGAGAATCATTGCATGATGAAAGCAAATGACATTATTAGCTCATCTTGCATCGAGGATTGGATAGTTCACTTCGCGCAACTGTTCAAGAACCATGTTGGATTTGAGTCTGACAGATATTTAGATTTTCATGAACTTGGGATGAAGCTCTATTCCGAAGCCATGGAGGAGACAGTTACGAGTGAAGAAGCACAAGGCCTATTTGACATCGCAGGAGGTAAGTTCCAAGAGATGGCAGCTCTAGCTTTGTTCAACTGGGGAAATGTGCATATGTCTCGGGCAAGAAAGAAAGTGTACTTAACCGACGATTCTTCAAAAGAGCATATGCAAGAACAAATTAAAAGTTCATATGAATGGGCACAAAAAGAGTATGCAAAAGCTGGAGAGAAATATGAAGCAGCCGTTGAAATTAAATCAGATTTTTATGAAGGCTTCATGGCACTTGGACAGCAGCAGTTTGAGAAAGCAAAACTTTCTTGGTATTATGCCCTCAGTAGTAATATAGATTTAGCAACATGGCCCTCCACCGAGGTTCTTCAGCTTTACAACAACGCCGAGAATAATATAGAGAAAGGAATACTGATATGGGAAGAATCAAAAGAGCAGCACTCGAGTGGAACCAGCGATCCAAATGATATTAGATTACATTTGCAAAAGGTGGGGTTGGCATCAGATGAAGCCGAAGCACAAGAAACAAAAATGAGGTGCCAAATAAACCTCCTGTGGGGTACCATGCTATATGAACGCTCAATCGTGGAATTCAAATTAGGACTACCAGTATGGCATGAATCTCTGGAAGTTGCAGTTGAGAAGTTTGAACTTGCTGGAGCATCTCCAACAGATATTGCTGTAATGTTGAAGAACCACTGTTCGAATGACACTTCCGTAGATGGTCTAGAATTCAAAATTGATGAAATAGTACAGGCATGGAATGAGATGTATGAAGCTAAAAAGTGGCACAATGGTGTTCCGTCATTTCGTTTGGAACCCTTATTTAAAAGGAGAGCATCTAAAATTTATCATGCTTTAGAGCTTGCATGA 2208 0.4013 MGKKKKQVGEKSEDSGNQSKAGDKSPKSYDNDTLVFISMSQELKDEGNKLFQKRDVEGALVKYEKALKLLPSNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPKYSKALLKRARCYDALNRLDLALRDVSTVLKMEPNNIMATEISDNVKRALEKKGLIVNDTEIELPPDYAEPPYGLSTKEVVKEKMHKKKSNKEKVKAPDKIVEKQAEEKSEEKKTEDRIVAKKAEESIAEKMAADNTVQKKAKKSKKKDREIIDEKKDDVKEVVGENSNGKSEVMPKKTAKLVFGEDIRCVELPVNCTLLRLREAICDRFPNLGAVLVKYKDQEGDLVTITCDEELRWAETGSQGSIRLYIVEANPDQDPFFEKLKVKDGKNVGIVNASENHCMMKANDIISSSCIEDWIVHFAQLFKNHVGFESDRYLDFHELGMKLYSEAMEETVTSEEAQGLFDIAGGKFQEMAALALFNWGNVHMSRARKKVYLTDDSSKEHMQEQIKSSYEWAQKEYAKAGEKYEAAVEIKSDFYEGFMALGQQQFEKAKLSWYYALSSNIDLATWPSTEVLQLYNNAENNIEKGILIWEESKEQHSSGTSDPNDIRLHLQKVGLASDEAEAQETKMRCQINLLWGTMLYERSIVEFKLGLPVWHESLEVAVEKFELAGASPTDIAVMLKNHCSNDTSVDGLEFKIDEIVQAWNEMYEAKKWHNGVPSFRLEPLFKRRASKIYHALELA* 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0248 735 PANTHER PROTEIN PHOX3 2 734 - -
Lan15g0248 735 MobiDBLite consensus disorder prediction 1 30 - -
Lan15g0248 735 CDD PB1 292 362 - -
Lan15g0248 735 MobiDBLite consensus disorder prediction 1 20 - -
Lan15g0248 735 SMART PB1_new 288 365 IPR000270 GO:0005515
Lan15g0248 735 PANTHER PROTEIN CLMP1 2 734 IPR044517 -
Lan15g0248 735 MobiDBLite consensus disorder prediction 195 229 - -
Lan15g0248 735 Gene3D Tetratricopeptide repeat domain 38 168 IPR011990 GO:0005515
Lan15g0248 735 SUPERFAMILY TPR-like 41 552 IPR011990 GO:0005515
Lan15g0248 735 SMART tpr_5 78 113 IPR019734 GO:0005515
Lan15g0248 735 SMART tpr_5 114 147 IPR019734 GO:0005515
Lan15g0248 735 SMART tpr_5 40 73 IPR019734 GO:0005515
Lan15g0248 735 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Lan15g0248 735 ProSiteProfiles PB1 domain profile. 288 365 IPR000270 GO:0005515
Lan15g0248 735 Gene3D - 289 365 - -
Lan15g0248 735 ProSiteProfiles TPR repeat profile. 114 147 IPR019734 GO:0005515
Lan15g0248 735 Pfam PB1 domain 290 363 IPR000270 GO:0005515
Lan15g0248 735 SUPERFAMILY CAD & PB1 domains 289 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0248 Lan-Chr15 2800523 2804669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0248 23 147 Calmodulin-binding Proteins AT3G25230 33.094 5.69e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0248 - - gmx:100820306 1086.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0248 15 2800523 2804669 Lan3g0930 3 20393460 20398135 LSH
Lan1g1155 1 21563504 21567954 Lan15g0248 15 2800523 2804669 PCT
Lan1g0270 1 1984507 1987826 Lan15g0248 15 2800523 2804669 PCT
Lan15g0248 15 2800523 2804669 Lan1g1155 1 21563504 21567954 PCT
Lan15g0248 15 2800523 2804669 Lan1g0270 1 1984507 1987826 PCT